Gene detail information of Glyur001750s00036527


Functional Annotation

DatabaseOrthologsE valueAnnotation
NRKEH29234.17.25E-39extensin-like repeat protein [Medicago truncatula]
COGYP_007067976.16.00E-13hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507]
Swissprottr|Q40358|PRP_MEDSA2.00E-37Repetitive proline-rich cell wall protein (Precursor)
trEMBLtr|A0A072UHK0|A0A072UHK0_MEDTR3.00E-39Extensin-like repeat protein {ECO:0000313|EMBL:KEH29234.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold017505894959381+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0005199  structural constituent of cell wall



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001750s00036527.1PF02095.10Extensin_127360.02
Glyur001750s00036527.1PF02095.10Extensin_137460.0017
Glyur001750s00036527.1PF02095.10Extensin_147560.66
Glyur001750s00036527.1PF02095.10Extensin_157660.0053
Glyur001750s00036527.1PF02095.10Extensin_167760.022
Glyur001750s00036527.1PF02095.10Extensin_177860.047
Glyur001750s00036527.1PF02095.10Extensin_187960.014
Glyur001750s00036527.1PF02095.10Extensin_1971060.022
Glyur001750s00036527.1PF02095.10Extensin_110911515


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control674.420
SRR1783600control646.926
SRR1783602moderate drought stress220.200
SRR1811619moderate drought stress226.015

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain81.448
DRR006520Root Summer glycyrrhizin high producing strain85.320
DRR006521Root Winter glycyrrhizin high producing strain68.744
DRR006522Root Winter glycyrrhizin high producing strain63.994
DRR006523Root Summer glycyrrhizin low producing strain12.205
DRR006524Root Summer glycyrrhizin low producing strain12.460
DRR006525Leaf Summer glycyrrhizin high producing strain262.549
DRR006526Leaf Summer glycyrrhizin high producing strain260.379

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)628.364
SRR2868004Drought Stress (root)395.080
SRR2967015Control (root)313.964

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf324.212
SRR9715740Leaf234.679
SRR9715741Leaf137.398
SRR9715739Root584.002
SRR9715742Root505.863
SRR9715743Root601.864

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2335.802
SRR8749028MeJA induced 9h1803.037
SRR8749029MeJA induced 9h1660.619
SRR8749030Uninduced329.686
SRR8749031Uninduced178.999
SRR8749032Uninduced498.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root374.376
SRR8400027Control - Root269.290

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved