Gene detail information of Glyur001750s00036523 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 3.00E-10 | Nucleic acid-binding, OB-fold-like protein |
| NR | KEH19553.1 | 5.10E-56 | animal RPA1 domain protein [Medicago truncatula] |
| trEMBL | tr|A0A072TRS5|A0A072TRS5_MEDTR | 2.00E-56 | Animal RPA1 domain protein {ECO:0000313|EMBL:KEH19553.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01750 | 18292 | 20451 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001750s00036523.1 | PF02721.9 | DUF223 | 44 | 138 | 1.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.305 |
| SRR1783600 | control | 0.345 |
| SRR1783602 | moderate drought stress | 0.329 |
| SRR1811619 | moderate drought stress | 0.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.441 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.052 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.872 |
| SRR2868004 | Drought Stress (root) | 0.523 |
| SRR2967015 | Control (root) | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.578 |
| SRR8749028 | MeJA induced 9h | 12.304 |
| SRR8749029 | MeJA induced 9h | 6.475 |
| SRR8749030 | Uninduced | 5.444 |
| SRR8749031 | Uninduced | 3.587 |
| SRR8749032 | Uninduced | 6.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.154 |
| SRR8400027 | Control - Root | 0.006 |