Gene detail information of Glyur001750s00036521 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61530.1 | 4.00E-159 | small G protein family protein / RhoGAP family protein |
| NR | XP_004506454.1 | 0 | PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q3E875|RGAPX_ARATH | 0 | Uncharacterized Rho GTPase-activating protein At5g61530 |
| trEMBL | tr|I1LVH2|I1LVH2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G37020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01750 | 3875 | 11404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001750s00036521.1 | PF00620.22 | RhoGAP | 155 | 294 | 3.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.142 |
| SRR1783600 | control | 4.167 |
| SRR1783602 | moderate drought stress | 5.869 |
| SRR1811619 | moderate drought stress | 5.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.920 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.041 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.517 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.663 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.394 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.909 |
| SRR2868004 | Drought Stress (root) | 29.412 |
| SRR2967015 | Control (root) | 27.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.160 |
| SRR9715740 | Leaf | 18.201 |
| SRR9715741 | Leaf | 28.303 |
| SRR9715739 | Root | 10.203 |
| SRR9715742 | Root | 14.624 |
| SRR9715743 | Root | 12.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.215 |
| SRR8749028 | MeJA induced 9h | 19.778 |
| SRR8749029 | MeJA induced 9h | 24.329 |
| SRR8749030 | Uninduced | 30.624 |
| SRR8749031 | Uninduced | 56.154 |
| SRR8749032 | Uninduced | 36.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.425 |
| SRR8400027 | Control - Root | 15.780 |