Gene detail information of Glyur001749s00029862 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58520.1 | 0 | lipases;hydrolases, acting on ester bonds |
| NR | XP_003556958.1 | 0 | PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max] |
| Swissprot | tr|F4IBD7|CSCLA_ARATH | 0 | CSC1-like protein RXW8 |
| trEMBL | tr|I1J3Z8|I1J3Z8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA0041S00290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01749 | 20443 | 44753 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001749s00029862.1 | PF13967.1 | RSN1_TM | 78 | 209 | 1.30E-29 |
| Glyur001749s00029862.1 | PF02714.10 | DUF221 | 343 | 661 | 1.10E-88 |
| Glyur001749s00029862.2 | PF13967.1 | RSN1_TM | 78 | 209 | 1.30E-29 |
| Glyur001749s00029862.2 | PF02714.10 | DUF221 | 343 | 661 | 1.20E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.692 |
| SRR1783600 | control | 3.830 |
| SRR1783602 | moderate drought stress | 3.263 |
| SRR1811619 | moderate drought stress | 3.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.412 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.717 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.470 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.493 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.629 |
| SRR2868004 | Drought Stress (root) | 17.902 |
| SRR2967015 | Control (root) | 15.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.654 |
| SRR9715740 | Leaf | 14.788 |
| SRR9715741 | Leaf | 10.100 |
| SRR9715739 | Root | 1.967 |
| SRR9715742 | Root | 5.097 |
| SRR9715743 | Root | 3.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.448 |
| SRR8749028 | MeJA induced 9h | 16.192 |
| SRR8749029 | MeJA induced 9h | 6.280 |
| SRR8749030 | Uninduced | 7.634 |
| SRR8749031 | Uninduced | 5.743 |
| SRR8749032 | Uninduced | 4.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.321 |
| SRR8400027 | Control - Root | 9.497 |