Gene detail

Gene detail information of Glyur001748s00034951

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09300.1	6.00E-136	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
NR	KEH35384.1	0	2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula]
COG	YP_005885326.1	3.00E-84	branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit [Marinobacter adhaerens HP15]
Swissprot	tr\|Q84JL2\|ODBA2_ARATH	2.00E-166	2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBL	tr\|A0A072V066\|A0A072V066_MEDTR	0	2-oxoisovalerate dehydrogenase subunit alpha {ECO:0000313\|EMBL:KEH35384.1}

Sequence

Transcript Sequence

>Glyur001748s00034951.1
GTCGCCACATGATAGACAACAGCAACTAAGATAAGCAAGCGTAGTGGGAGTGGATGGAGCTTTGTCCATTTTCCCCAATAGGCCCCTCTCAACCCATACCCATTTCAAATCCTTCACGTTTTATTTATTTATTCAATCTATTGTACATCTAATTCCTTTAATTTGATTCCTTCTAGCTACCTTCTAGCTAGCCCCTTCAATTTCCCTGTGAATATTAATTGTTCAAATTCAATCATAGCTAGCGAGCGTGAATATGGCAGCTTGGTTGTTGGTGGGAAAATCCAGAACCTTAACTCATCGCCAACACCTTCACAAAAACCTTGCCTTTTTGCTAGGATATAGTAATTCAGTTCTTAATAACCATAGCTACTACTCTTCTTCTTCTTCTTCTTCTTACAATATCTTTAGAACTCATCATGCATCATCATCACCGGTTAACAACAATTCAGCTAGGACCCTTTGCAGCTTCTTCTTCTTGCGTTATGAATCCACCAAAGCTGAGGCACAATTGGATTTGCAGCACCGTGTCAGCGACGACGAGGACCATGATGATCAGGTCATTGATTTTCCTGGTGGGAAAGTTGCATTTACTCCAGAAATGAGATTCATTTCTGATTCTTCTCAGAAAAGGGTGCCTTGTTATCGAGTTCTTGATGACGATGGAGAGCCCATGAAATGTAGTAATCACGTTCAGGTTAGCAAAGAAATGGCTATGAAGATGTATTCTAACATGGTCACACTTCAAACTATGGACAACATATTCTATGAAGTGCAGAGGCAAGGAAGAATTACTTTCTACCTCACCTCAATGGGAGAAGAAGCAGTTAACATTGCATCCGCAGCTGCGCTTTCTTTTGATGATATTATAATGCCTCAGAGCCTGGAGTTCTATTGTGGCGCGGCTTCACCCTGCAACAATTTGCTCACCAGTGCTTTGGAAACACTGAAGATTTTGAAATTCAGAACACAACTTCCTCAAGCTGTTGGTGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCAGTCACTTATTGTGGGGATGGAAGCACTAGTGAGGGAGATTTTCATGCTGTTATTTTTATCTGTCGCAACAATGGATGGGCCATCAGTACCCCCGTAGAAGAACAATTTCGAAGTCAAGCTTATGGCATCTGGAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCATGCTGCTCGTGAAATCGCCATAAAAGAACAAAGGCCAGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACACCACTCTACATCTGATGATTCAACTAAGTACAGGCCAATTGATGAGATTGAGTATTGGAAGATGGCAAGAAACCCTGTGAATAGATTCAAAAGATGGGTAGAAAGGAATGGTTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTGTCAGAAAGCAGTTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAGAAACCTCCACTTGAGGACTTGTTCACTGACGTTTATGACCAATTACCATCAAACCTTCAGGAGCAAGAGAGACTAACTAGAGAAACCATCGAGAAGCATCCCAAAGACTACCCTTCTGATGTTCCTTTGTAGATATATATTGCCAATTCAAATAACGATTTGTACTGAAGGTATTTGGCATAATGTAAAATATAGCCCTTGGAATCACGTAAGAAACCAAACACTTGAAACAGAGATAAGTTCACGGATCAATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01748	34336	43049	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00166	BCKDHA, bkdA1	EC:1.2.4.4	Propanoate metabolism	map00640
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001748s00034951.1	PF00676.15	E1_dh	159	208	1.60E-05
Glyur001748s00034951.1	PF00676.15	E1_dh	238	413	5.30E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.365
SRR1783600	control	34.841
SRR1783602	moderate drought stress	33.658
SRR1811619	moderate drought stress	33.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.114
DRR006520	Root Summer glycyrrhizin high producing strain	9.123
DRR006521	Root Winter glycyrrhizin high producing strain	10.999
DRR006522	Root Winter glycyrrhizin high producing strain	10.827
DRR006523	Root Summer glycyrrhizin low producing strain	7.874
DRR006524	Root Summer glycyrrhizin low producing strain	7.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.565
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.696

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.992
SRR2868004	Drought Stress (root)	37.560
SRR2967015	Control (root)	75.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.232
SRR9715740	Leaf	7.775
SRR9715741	Leaf	27.383
SRR9715739	Root	1.862
SRR9715742	Root	7.729
SRR9715743	Root	7.010

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.103
SRR8749028	MeJA induced 9h	38.780
SRR8749029	MeJA induced 9h	11.927
SRR8749030	Uninduced	189.312
SRR8749031	Uninduced	321.667
SRR8749032	Uninduced	199.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.074
SRR8400027	Control - Root	16.520