Gene detail

Gene detail information of Glyur001746s00033972.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02960.4	2.00E-71	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004490059.1	1.37E-178	PREDICTED: uncharacterized protein LOC101496707 [Cicer arietinum]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	1.00E-09	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|V7CJT4\|V7CJT4_PHAVU	3.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:ESW29618.1}

Sequence

Transcript Sequence

>Glyur001746s00033972.1
CTTTATCCATTTGTTAAGCAAAAATCTAAAAAGATAAATAAATAAATAAATAGAAGAAGAAAGAGAAGGAGCAAACGCGCAACGCAACACACACTGTTTTCAACTTTTCNTCAACCGCGTCTCTCTTTTTCTCTCCTCAATTTTTCTCATTCTTCCCCATTTCTCAATTTTCGGGTTTTGATTTTGAGTTTTGAATATTCCAATGAGCGATCACTTGGTGCTCTTCGTTGACCGTCTCGTGCACCCAGTCCCCGTTGACCCNGTCGAGCAGCCTGCACAGCTCCCTTCTGAACCCTCGCCGTCTCCGGCCGCCGCTGATGTCGCCGCCGGGCCCTCTGGCTCCGCTCCGGAGGCGGATCGCGATGGCGAGGGTTCTGACGACGAGGAGGAGCCGCTGATCCAGATGGCAGAGTGTCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACTCCCTGCGCCTGCAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAGCCTGGGTATACTGCTCCACCACCTCGCCCTAATCCTGAAGAAACTACTATTGATATAGGAGGAGGCTGGACAATATCTGGCACACCTTTGGACTTGCGTGATCCTAGACTATTGGCAATTGCAGAAGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTCTCTGTCACAGATGGTGATGCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCCTGCTTCGAGCTGCNGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCATTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGGGCAGAGTAGAGGTCTACAATTTGCGATAGCGCCAGGGCCCACAGTACAGCAGGAACAAGTGTAGTATGTATTTTGTATGGGGTGAGTTCCCATGGCGTGTACGCCATACAAAGAAGNCTTGTTGAAATGCCATGCATTTGTTACTCTTGATTTTCACAGCTCCAAATGTGTATGTACATAAACCTCGGGGTGGTAAAAGCTACATGAATCCATCCATTATTATACATTCAATTCATCGATATATGAATGTAATCGAATCCATCCGGTTATAATAACTAGAGATTTATATGGAAAATGATGATTAATGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01746	39045	42802	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001746s00033972.1	PF12906.2	RINGv	71	116	6.50E-13
Glyur001746s00033972.1	PF12428.3	DUF3675	122	242	8.40E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.387
SRR1783600	control	71.262
SRR1783602	moderate drought stress	44.504
SRR1811619	moderate drought stress	43.742

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	84.771
DRR006520	Root Summer glycyrrhizin high producing strain	84.349
DRR006521	Root Winter glycyrrhizin high producing strain	60.048
DRR006522	Root Winter glycyrrhizin high producing strain	57.684
DRR006523	Root Summer glycyrrhizin low producing strain	99.471
DRR006524	Root Summer glycyrrhizin low producing strain	101.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	93.950
SRR2868004	Drought Stress (root)	102.702
SRR2967015	Control (root)	97.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	247.381
SRR9715740	Leaf	135.679
SRR9715741	Leaf	296.419
SRR9715739	Root	105.954
SRR9715742	Root	152.979
SRR9715743	Root	142.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	201.440
SRR8749028	MeJA induced 9h	130.503
SRR8749029	MeJA induced 9h	235.079
SRR8749030	Uninduced	181.941
SRR8749031	Uninduced	287.960
SRR8749032	Uninduced	192.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	93.904
SRR8400027	Control - Root	112.415