Gene detail information of Glyur001746s00033967 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49750.1 | 7.00E-76 | Leucine-rich repeat (LRR) family protein |
| NR | XP_003538630.1 | 2.83E-147 | PREDICTED: uncharacterized protein At4g06744-like [Glycine max] |
| COG | YP_004735589.1 | 3.00E-18 | Receptor-like protein kinase [Zobellia galactanivorans] |
| Swissprot | tr|Q8W3M4|Y4744_ARATH | 1.00E-73 | Uncharacterized protein At4g06744 (Precursor) |
| trEMBL | tr|K7LMA0|K7LMA0_SOYBN | 1.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00240.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01746 | 6172 | 10108 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001746s00033967.1 | PF08263.7 | LRRNT_2 | 100 | 122 | 0.077 |
| Glyur001746s00033967.1 | PF13516.1 | LRR_6 | 189 | 201 | 1 |
| Glyur001746s00033967.1 | PF00560.28 | LRR_1 | 210 | 232 | 0.67 |
| Glyur001746s00033967.1 | PF08263.7 | LRRNT_2 | 505 | 536 | 0.00063 |
| Glyur001746s00033967.1 | PF13516.1 | LRR_6 | 603 | 615 | 0.97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.407 |
| SRR1783600 | control | 2.508 |
| SRR1783602 | moderate drought stress | 1.344 |
| SRR1811619 | moderate drought stress | 1.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.857 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.929 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.666 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.505 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.994 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.731 |
| SRR2868004 | Drought Stress (root) | 0.338 |
| SRR2967015 | Control (root) | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.711 |
| SRR9715740 | Leaf | 0.784 |
| SRR9715741 | Leaf | 0.874 |
| SRR9715739 | Root | 4.614 |
| SRR9715742 | Root | 7.035 |
| SRR9715743 | Root | 6.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.053 |
| SRR8749028 | MeJA induced 9h | 0.029 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.783 |
| SRR8400027 | Control - Root | 2.861 |