Gene detail information of Glyur001743s00036434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34320.1 | 2.00E-56 | Protein of unknown function (DUF668) |
| NR | KHN17419.1 | 1.51E-81 | hypothetical protein glysoja_026962, partial [Glycine soja] |
| Swissprot | tr|Q9M153|GDL61_ARATH | 3.00E-28 | GDSL esterase/lipase At4g01130 (Precursor) |
| trEMBL | tr|A0A072V1T0|A0A072V1T0_MEDTR | 1.00E-80 | DUF668 family protein {ECO:0000313|EMBL:KEH35646.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01743 | 26209 | 38579 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001743s00036434.1 | PF11961.3 | DUF3475 | 87 | 143 | 1.40E-20 |
| Glyur001743s00036434.1 | PF05003.7 | DUF668 | 569 | 653 | 3.90E-24 |
| Glyur001743s00036434.2 | PF11961.3 | DUF3475 | 87 | 143 | 1.30E-20 |
| Glyur001743s00036434.2 | PF05003.7 | DUF668 | 523 | 607 | 3.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.976 |
| SRR1783600 | control | 4.161 |
| SRR1783602 | moderate drought stress | 5.683 |
| SRR1811619 | moderate drought stress | 5.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.657 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.907 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.955 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.411 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.639 |
| SRR2868004 | Drought Stress (root) | 10.356 |
| SRR2967015 | Control (root) | 9.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.175 |
| SRR9715740 | Leaf | 1.597 |
| SRR9715741 | Leaf | 5.406 |
| SRR9715739 | Root | 0.391 |
| SRR9715742 | Root | 2.078 |
| SRR9715743 | Root | 1.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.549 |
| SRR8749028 | MeJA induced 9h | 8.856 |
| SRR8749029 | MeJA induced 9h | 6.110 |
| SRR8749030 | Uninduced | 5.744 |
| SRR8749031 | Uninduced | 6.094 |
| SRR8749032 | Uninduced | 4.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.747 |
| SRR8400027 | Control - Root | 9.735 |