Gene detail information of Glyur001741s00036712 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39710.1 | 2.00E-120 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004498166.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 2.00E-141 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|A0A072VGK6|A0A072VGK6_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH40736.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01741 | 19598 | 21844 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001741s00036712.1 | PF13041.1 | PPR_2 | 160 | 208 | 4.40E-13 |
| Glyur001741s00036712.1 | PF13041.1 | PPR_2 | 253 | 299 | 5.80E-17 |
| Glyur001741s00036712.1 | PF12854.2 | PPR_1 | 317 | 346 | 2.00E-05 |
| Glyur001741s00036712.1 | PF01535.15 | PPR | 379 | 403 | 0.0043 |
| Glyur001741s00036712.1 | PF13041.1 | PPR_2 | 410 | 454 | 2.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.017 |
| SRR1783600 | control | 3.990 |
| SRR1783602 | moderate drought stress | 7.051 |
| SRR1811619 | moderate drought stress | 6.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.847 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.551 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.902 |
| SRR2868004 | Drought Stress (root) | 7.661 |
| SRR2967015 | Control (root) | 7.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.072 |
| SRR9715740 | Leaf | 4.567 |
| SRR9715741 | Leaf | 4.512 |
| SRR9715739 | Root | 3.123 |
| SRR9715742 | Root | 4.211 |
| SRR9715743 | Root | 4.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.900 |
| SRR8749028 | MeJA induced 9h | 4.285 |
| SRR8749029 | MeJA induced 9h | 1.777 |
| SRR8749030 | Uninduced | 1.532 |
| SRR8749031 | Uninduced | 0.356 |
| SRR8749032 | Uninduced | 0.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.237 |
| SRR8400027 | Control - Root | 12.845 |