Gene detail information of Glyur001740s00035375 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G32260.1 | 5.00E-08 | Nucleic acid-binding proteins superfamily |
| NR | AES87871.2 | 3.60E-56 | replication factor-A carboxy-terminal domain protein [Medicago truncatula] |
| trEMBL | tr|G7JRF3|G7JRF3_MEDTR | 1.00E-56 | Replication factor-A carboxy-terminal domain protein {ECO:0000313|EMBL:AES87871.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01740 | 52062 | 55730 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001740s00035375.1 | PF02721.9 | DUF223 | 43 | 89 | 1.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.118 |
| SRR1783600 | control | 1.007 |
| SRR1783602 | moderate drought stress | 7.013 |
| SRR1811619 | moderate drought stress | 6.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.621 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.660 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.234 |
| SRR2868004 | Drought Stress (root) | 0.147 |
| SRR2967015 | Control (root) | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.358 |
| SRR9715740 | Leaf | 2.188 |
| SRR9715741 | Leaf | 1.198 |
| SRR9715739 | Root | 0.203 |
| SRR9715742 | Root | 0.418 |
| SRR9715743 | Root | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.287 |
| SRR8400027 | Control - Root | 0.487 |