Gene detail information of Glyur001739s00036898 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 2.00E-20 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003613325.1 | 3.57E-70 | Resistance protein [Medicago truncatula] |
| Swissprot | tr|Q7XA42|RGA1_SOLBU | 4.00E-43 | Putative disease resistance protein RGA1 |
| trEMBL | tr|G7K2V7|G7K2V7_MEDTR | 1.00E-70 | NB-ARC domain disease resistance protein {ECO:0000313|EMBL:AES96283.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01739 | 4 | 905 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001739s00036898.1 | PF00931.17 | NB-ARC | 10 | 56 | 1.30E-05 |
| Glyur001739s00036898.1 | PF00931.17 | NB-ARC | 57 | 129 | 9.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.131 |
| SRR1783600 | control | 3.144 |
| SRR1783602 | moderate drought stress | 2.021 |
| SRR1811619 | moderate drought stress | 2.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.557 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.632 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.089 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.881 |
| SRR9715740 | Leaf | 3.344 |
| SRR9715741 | Leaf | 6.130 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.828 |
| SRR9715743 | Root | 0.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.607 |
| SRR8400027 | Control - Root | 3.092 |