Gene detail

Gene detail information of Glyur001736s00033404

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32990.1	1.00E-72	plastid ribosomal protein l11
NR	AFK36774.1	7.62E-115	unknown [Lotus japonicus]
COG	YP_007108574.1	8.00E-66	50S ribosomal protein L11 [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9MAP3\|RK11_ARATH	2.00E-105	50S ribosomal protein L11, chloroplastic (Precursor)
trEMBL	tr\|I3S932\|I3S932_LOTJA	3.00E-115	Uncharacterized protein {ECO:0000313\|EMBL:AFK36774.1}

Sequence

Transcript Sequence

>Glyur001736s00033404.1
AAATAATTAAAAAAGGGGCCCTGCTCTCTACTACTAGCATTAGCATAGCAGTTGAAGATAGTGTTTTGAAGATACGGCGTTTTATCCGAACTCGACTGACTCTGTGTTAGCCGCTAAAGATTGAAGCAATGGCGTCAACTCTGTTCACCTCTCCGTCGTGTTCTTCCTCCATGTTTTCCTCATCCGTAAAATTCTCGTTNAAACCGAGAACTACCATTTCTTTTCCCTTCCTTGAAACCCAAAACCCCCTTCGCACTCTTTCTCCAACTCCTCAATCTCCCATCCCATCTCGAAGGCGCTTCAATGTCATTGCTATGGCTCCCCCAAAGCCCGGTGGCGGTGGCAAGGCCAAAAAAGTGGTTGGGGTGATAAAGCTGGCTCTGGAAGCTGGGAAGGCNACACCTGCTCCTCCGGTTGGACCGGCTCTTGGTTCAAAGGGNGTCAACATTATGGCTTTCTGTAAGGATTACAATGCCAGAACCGCCGATAAGCCCGGTTACGTCATCCCCGTCGAAATCACTGTCTTCGACGATAAAAGCTTTACTTTCATATTGAAGACACCACCTGCTTCCGTTCTACTGCTTAAGGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCCAAGATGCAAAAAGTAGGAAAAATCACAATTGATCAATTGCGTACAATTGCTGCTGAAAAGTTGCCAGACTTGAATTGCTCTACCATGGAATCAGCTATGAGAATTATAGCGGGCACTGCGGCAAATATGGGAATTGATGTTGATCCTCCTGTTCTTGAACCCAAACAGAAACAACTTGTGTAACATTTTTTTTCCCTTAATTTTTTACCCAAGTGCAAGACAGTCCTTGCTGCCTACGTTATCCATGAACAAGATCACGCTGGACATTTTATTGTACACTGTTTTCTCTTCTAAAACAGCAAGGAGAACAATCAATTTTAACTATTTCGTATTATTTGAATGGTATTTATACATGGATTTCACTTTGGTATGTCACCATAATAAAGTGACACGTCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01736	27377	29396	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001736s00033404.1	PF03946.9	Ribosomal_L11_N	80	138	2.70E-28
Glyur001736s00033404.1	PF00298.14	Ribosomal_L11	143	211	1.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.353
SRR1783600	control	76.227
SRR1783602	moderate drought stress	31.017
SRR1811619	moderate drought stress	30.744

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.190
DRR006520	Root Summer glycyrrhizin high producing strain	33.961
DRR006521	Root Winter glycyrrhizin high producing strain	5.267
DRR006522	Root Winter glycyrrhizin high producing strain	5.291
DRR006523	Root Summer glycyrrhizin low producing strain	31.950
DRR006524	Root Summer glycyrrhizin low producing strain	31.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	155.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	152.107

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.101
SRR2868004	Drought Stress (root)	25.009
SRR2967015	Control (root)	23.852

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	113.895
SRR9715740	Leaf	120.336
SRR9715741	Leaf	78.091
SRR9715739	Root	34.917
SRR9715742	Root	26.629
SRR9715743	Root	24.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.069
SRR8749028	MeJA induced 9h	19.854
SRR8749029	MeJA induced 9h	16.125
SRR8749030	Uninduced	13.604
SRR8749031	Uninduced	4.191
SRR8749032	Uninduced	9.786

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.445
SRR8400027	Control - Root	66.657