Gene detail information of Glyur001736s00033403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02290.1 | 5.00E-147 | glycosyl hydrolase 9B13 |
| NR | XP_003601448.1 | 0 | Endo-1 4-beta-glucanase [Medicago truncatula] |
| COG | YP_004908734.1 | 8.00E-71 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| Swissprot | tr|P05522|GUN1_PERAE | 0 | Endoglucanase 1 (Precursor) |
| trEMBL | tr|G7J7D9|G7J7D9_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01736 | 21173 | 24312 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001736s00033403.1 | PF00759.14 | Glyco_hydro_9 | 32 | 58 | 8.10E-05 |
| Glyur001736s00033403.1 | PF00759.14 | Glyco_hydro_9 | 59 | 444 | 1.90E-133 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.632 |
| SRR1783600 | control | 17.621 |
| SRR1783602 | moderate drought stress | 3.773 |
| SRR1811619 | moderate drought stress | 3.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.079 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.321 |
| SRR2868004 | Drought Stress (root) | 2.073 |
| SRR2967015 | Control (root) | 4.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.877 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.131 |
| SRR9715739 | Root | 8.907 |
| SRR9715742 | Root | 2.354 |
| SRR9715743 | Root | 2.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.869 |
| SRR8749028 | MeJA induced 9h | 1.100 |
| SRR8749029 | MeJA induced 9h | 7.149 |
| SRR8749030 | Uninduced | 0.152 |
| SRR8749031 | Uninduced | 0.435 |
| SRR8749032 | Uninduced | 0.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.044 |
| SRR8400027 | Control - Root | 15.991 |