Gene detail information of Glyur001736s00033401 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64680.1 | 9.00E-69 | |
| NR | XP_004502060.1 | 5.31E-89 | PREDICTED: beta-carotene isomerase D27, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q7XA78|D27_ARATH | 1.00E-43 | Beta-carotene isomerase D27, chloroplastic (Precursor) |
| trEMBL | tr|G7J804|G7J804_MEDTR | 3.00E-89 | D27 family protein, putative {ECO:0000313|EMBL:AES71701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01736 | 759 | 2913 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001736s00033401.1 | PF13225.1 | DUF4033 | 25 | 108 | 1.20E-39 |
| Glyur001736s00033401.2 | PF13225.1 | DUF4033 | 25 | 108 | 1.20E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.096 |
| SRR1783600 | control | 0.120 |
| SRR1783602 | moderate drought stress | 0.199 |
| SRR1811619 | moderate drought stress | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.072 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.942 |
| SRR2868004 | Drought Stress (root) | 1.318 |
| SRR2967015 | Control (root) | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 86.651 |
| SRR9715740 | Leaf | 109.120 |
| SRR9715741 | Leaf | 94.071 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.130 |
| SRR9715743 | Root | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.716 |
| SRR8749028 | MeJA induced 9h | 4.405 |
| SRR8749029 | MeJA induced 9h | 3.741 |
| SRR8749030 | Uninduced | 4.346 |
| SRR8749031 | Uninduced | 2.366 |
| SRR8749032 | Uninduced | 5.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.715 |
| SRR8400027 | Control - Root | 2.063 |