Gene detail

Gene detail information of Glyur001735s00030584

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	1.00E-107	NB-ARC domain-containing disease resistance protein
NR	XP_004515441.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	YP_004966316.1	2.00E-09	small GTP-binding protein domain-containing protein [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q39214\|RPM1_ARATH	3.00E-141	Disease resistance protein RPM1
trEMBL	tr\|A0A072TE29\|A0A072TE29_MEDTR	0	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH15652.1}

Sequence

Transcript Sequence

>Glyur001735s00030584.1
ATGGCAGAAACTGCAGTATTTTTTGCCCTGGGGGAAGTGTTCCAATTCCTAAAAGAAGAAACAAATCTCCTGAGAGGTGTGCACAGAGATTTTTCAGACATCAAAGATGAACTAGAGAGCATTCAAACCGTCCTCAAAGACGCAGATAGAAGGGCCGCAGATGAAGCAGACACCAACGATGGAATAAGAACTTGGGTNAAGCAGCTGAGAGAAGCATCATTTCGCATTGAAGATGTCATTCATGAATACCTTTGGGTGATGCACAGGGCCAATCCACCTGGATGTGGAGCTTTAGTCTGCAATATTGCAAGCCTCATCAAAACTTTGATTCCCCGTCATCGGATAGCATCTGAGATTCAGGACATTAAGTTGTCAGTTCGTGGAATCAAGGAAAGAAGTGAACGATATAACTTTCAAATTTTACATNAACAAGGATCATCAAACAGCAGCAGCAGAGACGATGGAAGATGGCGTGATCCTCGATTGTCTTCCCTTTTCATAGAAGAAACTGAAGTTGTAGGATTTGAAGGCCCAAGAGAAGAATTGTTTGGTTGGTTGTTGGCAGGTGCAGCTGAGCGCACAGTGATTTCAGTGGTAGGAATGGGGGGCCTTGGAAAAACCACTCTAGCCAAGCAAGTCTTTGACAGCCAAAAGGTAACAACACACTTTGATTGTCGTGCTTGCATCACAGTTTCTCAATCATACACTGTGAGAGGGTTATTGATAAAAATGATGGAGCAATTTTGTAAAGAAACTAAAGACCCTCTTCCGTATATGTTACACAAAATGGATGACAATTCACTGATTACAGAAGTGAGGCAATACCTGCATCGTAAGAGGTATCTGATATTCTTTGATGATGTATGGCAAGAAGATTTTTCCGACCAGGTTGAATTTGCCCTGCCTAATAACAACAAAGGAAGTAGAATCATGATCACCACTAGAATGANGCATGTTGCAGAATTTTTCAAGAAATCCTTTCCACTTCATGNTCACAACCTGCAACTTTTGCCTCCAAACAAAGCATGGGAACTCTTCTGCAANAAGGCATTTAGATTTGAGCTTGACGGGCATTGTCCACTGGAGCTGGAGGCTGTGTCAAACGAAATTGCTCAAAAATGCAAGCAGCTACCTCTAGCAATTGTAGCCATTGGTGGTCTACTTTCAACAAAACCTAAAACCATGATTGAATGGAACAACGTGAGTCAAAATCTGAGGCTGGAGTTGGGACGTAATGCCCATCTAACTAGTCTAACAAAGATTTTATCTCTTAGTTATGATGACCTGCCTTACTATTTGAAACCATGCATTTTGTATTTTGGTATATATCCAGAGGACTACTCTGTTAATCATAAGAGATTAACTAGACAATGGATAGCTGAAGGGTTTGTTAAATCTGACGAGACCAGATCTCCAGAGGAAGTCGCAGAGGAGTACTTGTCCCAATTGATTCATAGAAGTCTGGTTCAGGTCTCAAAAGTTGGCTTTGAAGGGAAAGTTAAGACATGTCAAGTCCATGATTTATTACGGGAAGTGCTCGTTAGGAAAATGAAGTATTTAAGTTTCTGTCATGTTGTGAATGAAGATGATGATTCAAACGCAGTTGGAATAATTAGACGCCTATCTGTAGCCACTGCCAATTCCAACAATGTGTTGAATAGAACTAACAATTCACAAATTCGTGCTTTTCATGTTTTTGAAAAACGTGGATTGTCAGAGCCTTTCATCATGGGTAAATTATGTTCAAGGTCTAGGATTTTGAAGGTACTTGACATTCAAGGTACATCGTTGAATTATATTCCTAATAATTTGGGGAATCTTTTTCATTTGAGGCACATAAACCTGAAGAATACAAAAGTACAGGTTCTTCCTAAATCTGTTGGTCAGCTACAAAACTTAGAGACATTGGATTTAAGACAAACACTTGTGCACGAATTACCAAGTGAAATAAACAAGCTCACAAAACTGCGGCATCTCCATGCTTTCCATCGAAACTATGAAACAAAGTATTCTCTTTTGGGATTTACAACTGGTGTGCTGATGGAAAAAGGTATTAAAANCTTGACTTCCCTACAAAATCTTTGTTATGTGGACGTAGATCGTGGGGGAGTAGATCTCATTCAAGAGATGAAGATGTTGAGGCAGTTAAGGAAGTTAGGTTTAAGGCATGTAAGAAGAGAACANGGGAATGCCTTAAGTGCTGNTGTGGCAGAGATGACACACCTTGAATCACTTAATATCACTACAATAGTTGAGGATGAATTCATTGACTTGAACTTTATATCATTCCCATCCCAACTTCAGCGGCTTCATTTGAAAGCTAGACTAGAGAAGTTGCCCGATTGGATTCCAAAACTTGAGTATCTTGTCAAGATAAGGCTGGGTTTATCCAAGTTGAAAGATGATCCACTACAGTCACTGAAAAACTTGCCAAATCTGCTGAAGCTCTCTTTGTGGGACAATGCCTATGATGGCGAAATTTTGTATTTTCAAAATGGAGGGTTTCCAAAATTGAGGGAACTGAATCTCACTCGCTTGAATAGTGTAAATTCCATCCTTATAGACAAAGGAGCTTTGCTCTGTCTTGAACATCTTAAAATGGACAAAATTTCCCAACTGAAGGAGGTACCCTCTGGCATCANNNCCTTGGATAACCTCAAAGTTATTGACTTCGTTGATATGCCAGATGAGTTTGTTGGGAGCATTGATCCAGATGTAGGACAAGAGTACTGGATTATCAAGCATGTTCCTCTTGTACTCATTCGTCACTGGATTGGCCCAAAATTCTATNATTATGAGATTCGCACTATTCACTCATCCTCTAAGGATTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01735	47121	49955	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001735s00030584.1	PF00931.17	NB-ARC	180	467	1.30E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.930
SRR1783600	control	2.861
SRR1783602	moderate drought stress	3.628
SRR1811619	moderate drought stress	3.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.278
DRR006520	Root Summer glycyrrhizin high producing strain	1.283
DRR006521	Root Winter glycyrrhizin high producing strain	0.748
DRR006522	Root Winter glycyrrhizin high producing strain	0.898
DRR006523	Root Summer glycyrrhizin low producing strain	1.588
DRR006524	Root Summer glycyrrhizin low producing strain	1.559
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.750
SRR2868004	Drought Stress (root)	15.202
SRR2967015	Control (root)	12.354

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.766
SRR9715740	Leaf	0.683
SRR9715741	Leaf	1.165
SRR9715739	Root	0.123
SRR9715742	Root	1.210
SRR9715743	Root	0.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.177
SRR8749028	MeJA induced 9h	4.259
SRR8749029	MeJA induced 9h	2.443
SRR8749030	Uninduced	2.796
SRR8749031	Uninduced	2.481
SRR8749032	Uninduced	2.488

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.709
SRR8400027	Control - Root	4.900