Gene detail information of Glyur001735s00030578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52970.1 | 5.00E-08 | downregulated in DIF1 11 |
| NR | XP_004517167.1 | 6.62E-64 | PREDICTED: uncharacterized protein LOC101501178, partial [Cicer arietinum] |
| trEMBL | tr|A0A072V6E8|A0A072V6E8_MEDTR | 1.00E-60 | ECA1 gametogenesis related family {ECO:0000313|EMBL:KEH37367.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01735 | 19795 | 21039 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001735s00030578.1 | PF05617.6 | Prolamin_like | 28 | 105 | 2.60E-10 |
| Glyur001735s00030578.1 | PF05617.6 | Prolamin_like | 115 | 180 | 1.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.631 |
| SRR1783600 | control | 0.634 |
| SRR1783602 | moderate drought stress | 0.506 |
| SRR1811619 | moderate drought stress | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.935 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.769 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.802 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.103 |
| SRR2868004 | Drought Stress (root) | 1.250 |
| SRR2967015 | Control (root) | 1.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.814 |
| SRR9715740 | Leaf | 0.108 |
| SRR9715741 | Leaf | 1.435 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.129 |
| SRR9715743 | Root | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.924 |
| SRR8749028 | MeJA induced 9h | 12.341 |
| SRR8749029 | MeJA induced 9h | 8.337 |
| SRR8749030 | Uninduced | 24.122 |
| SRR8749031 | Uninduced | 23.740 |
| SRR8749032 | Uninduced | 21.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.197 |
| SRR8400027 | Control - Root | 0.257 |