Gene detail information of Glyur001734s00030851 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07750.1 | 3.00E-117 | RmlC-like cupins superfamily protein |
| NR | XP_007132115.1 | 0 | hypothetical protein PHAVU_011G067800g [Phaseolus vulgaris] |
| Swissprot | tr|P05190|LEGB4_VICFA | 2.00E-21 | Legumin type B beta chain (Precursor) |
| trEMBL | tr|V7AEY9|V7AEY9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04109.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01734 | 45327 | 46839 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001734s00030851.1 | PF00190.17 | Cupin_1 | 11 | 91 | 6.90E-15 |
| Glyur001734s00030851.1 | PF00190.17 | Cupin_1 | 193 | 292 | 1.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.142 |
| SRR1783600 | control | 5.011 |
| SRR1783602 | moderate drought stress | 3.721 |
| SRR1811619 | moderate drought stress | 3.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.975 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.103 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.295 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.035 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.791 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.846 |
| SRR2868004 | Drought Stress (root) | 5.523 |
| SRR2967015 | Control (root) | 5.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.501 |
| SRR9715740 | Leaf | 0.437 |
| SRR9715741 | Leaf | 0.617 |
| SRR9715739 | Root | 12.809 |
| SRR9715742 | Root | 16.135 |
| SRR9715743 | Root | 12.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.462 |
| SRR8749028 | MeJA induced 9h | 0.745 |
| SRR8749029 | MeJA induced 9h | 2.033 |
| SRR8749030 | Uninduced | 0.900 |
| SRR8749031 | Uninduced | 0.831 |
| SRR8749032 | Uninduced | 2.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.427 |
| SRR8400027 | Control - Root | 10.826 |