Gene detail

Gene detail information of Glyur001734s00030847

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39460.2	9.00E-52	ribosomal protein L23AA
NR	XP_006436065.1	6.68E-92	hypothetical protein CICLE_v10032980mg [Citrus clementina]
COG	NP_579552.1	8.00E-21	50S ribosomal protein L23 [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q9AT35\|RL23A_DAUCA	8.00E-83	60S ribosomal protein L23a
trEMBL	tr\|A0A067FK20\|A0A067FK20_CITSI	2.00E-92	Uncharacterized protein {ECO:0000313\|EMBL:KDO67734.1}

Sequence

Transcript Sequence

>Glyur001734s00030847.1
CTAGAGCCGGCTTGTTCCTCTGCCTCTGCGTCGCGCAGGAATTAGGGATATTTGACAGGTAGAGTTTCTTTTCCCTCCTCAACCTATGGCTCCACCAAAAGGTGATGGTTCTAAGAAGACTGATCCGAAGGCACAGGCCTTGAAAACTGCTAAAGCAGTAAAGTCTGGCCCTGCATTTAAGAAGAAGGCCAAGAAGATCCGAACAACTGTCACTTTCCATCGGCCAAAGACATTGACAAAGGATAGGAACCCCAAATACCCTCGCATTAGTGCCCCACCCAGGAATAAGCTTGATCACTATCAGATTCTGAAGTACCCTCTCACCACCGAGTCGGCAATGAAGAAAATTGAAGACAACAATACTTTGGTTTTCATTGTTGACCTGCGTGCTGACAAGAAGAAGATAAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCGAAGAAGGTTAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACTCCTGATTACGATGCATTGGATGTAGCAAACAAGATCGGGATTATCTAAGGTAGTACCTGGGTTCATCCGGGTTCTATTTAGATGTTAGGCAGTTCTATGATCATTGGTGGAAACTTTTTAAAATGGATAAGTTCTATATTTTGTGTTTTGTTGTTCTGTATCTTTTGTTTCAATTGACACTAAGCAGACCTCGTGTTTCAATTTTGACTTTAGAAATGTTTAAATTGATGATTGAAATGAGAACATTAAAATTTTCAAAGTTTTGGTGATTAAGCCACATGGATTTTGTTTAAACTGCTATTGGTGTTACCGACAAAATTGTCCAGTGCTGTATTTTGGTATTTATGGGACATCTTGTGCCATTCAAATAACAGTAATCAACCCACAAGGGATGGCTCAACTGTTGAGTAAATTTGAGTTCAGTAATTTTGAAGTCTTTACAATGTTAGAAGCTTGAGTTGGCAGAGGGGATAGCATGAGGATTANTATTATATGTGGAACACGATGAAAAATAACTCTCACCTGGGACATGGTTAGATGGAGGGTTTTGGAAGGAAAGCAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01734	25286	27341	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0000166 nucleotide binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001734s00030847.1	PF03939.8	Ribosomal_L23eN	13	66	2.80E-19
Glyur001734s00030847.1	PF00276.15	Ribosomal_L23	72	150	3.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	213.826
SRR1783600	control	214.612
SRR1783602	moderate drought stress	157.163
SRR1811619	moderate drought stress	156.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	223.971
DRR006520	Root Summer glycyrrhizin high producing strain	221.634
DRR006521	Root Winter glycyrrhizin high producing strain	120.632
DRR006522	Root Winter glycyrrhizin high producing strain	117.648
DRR006523	Root Summer glycyrrhizin low producing strain	201.617
DRR006524	Root Summer glycyrrhizin low producing strain	201.385
DRR006525	Leaf Summer glycyrrhizin high producing strain	84.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	84.707

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	293.121
SRR2868004	Drought Stress (root)	179.987
SRR2967015	Control (root)	164.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.754
SRR9715740	Leaf	108.807
SRR9715741	Leaf	101.677
SRR9715739	Root	90.967
SRR9715742	Root	142.324
SRR9715743	Root	126.589

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	662.631
SRR8749028	MeJA induced 9h	251.843
SRR8749029	MeJA induced 9h	504.739
SRR8749030	Uninduced	109.242
SRR8749031	Uninduced	92.524
SRR8749032	Uninduced	131.108

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	256.664
SRR8400027	Control - Root	212.826