Gene detail information of Glyur001734s00030845 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36830.1 | 6.00E-110 | gamma tonoplast intrinsic protein |
| NR | KHN21988.1 | 2.67E-159 | Aquaporin TIP1-3 [Glycine soja] |
| COG | YP_004368495.1 | 4.00E-33 | MIP family channel protein [Marinithermus hydrothermalis DSM 14884] |
| Swissprot | tr|P25818|TIP11_ARATH | 2.00E-138 | Aquaporin TIP1-1, N-terminally processed |
| trEMBL | tr|C6T7N4|C6T7N4_SOYBN | 5.00E-159 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU17836.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01734 | 6295 | 7328 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001734s00030845.1 | PF00230.15 | MIP | 16 | 234 | 8.10E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.962 |
| SRR1783600 | control | 3.953 |
| SRR1783602 | moderate drought stress | 2.257 |
| SRR1811619 | moderate drought stress | 2.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.334 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.020 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.766 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.196 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.770 |
| SRR2868004 | Drought Stress (root) | 40.583 |
| SRR2967015 | Control (root) | 54.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 122.106 |
| SRR9715740 | Leaf | 51.972 |
| SRR9715741 | Leaf | 39.810 |
| SRR9715739 | Root | 11.319 |
| SRR9715742 | Root | 2.933 |
| SRR9715743 | Root | 3.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.179 |
| SRR8749028 | MeJA induced 9h | 0.584 |
| SRR8749029 | MeJA induced 9h | 0.735 |
| SRR8749030 | Uninduced | 0.924 |
| SRR8749031 | Uninduced | 0.783 |
| SRR8749032 | Uninduced | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.229 |
| SRR8400027 | Control - Root | 0.949 |