Gene detail

Gene detail information of Glyur001733s00027629.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78980.1	0	STRUBBELIG-receptor family 5
NR	KHN38109.1	0	Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
COG	YP_004429344.1	1.00E-20	leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5]
Swissprot	tr\|Q6R2K1\|SRF5_ARATH	0	Protein STRUBBELIG-RECEPTOR FAMILY 5 (Precursor)
trEMBL	tr\|I1KVV7\|I1KVV7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24170.1}

Sequence

Transcript Sequence

>Glyur001733s00027629.1
CCCATCTATGAGGGGAGGAGAGTGTAATTTACGCAAAAGAAAATGAAGTATAAAGAGGTAATAAAATATCTAAATCCNCGGGTGGCGGGTGCAGCTCCGCAAAAGAGTGCGAGCGCCTTGCTGCCCTTGCATTCCGCTATNCTATGGCGCTGCGCTTGTCCTTGTCATTGCCAGCCAGTAATTCAATTCAATTCAGAGCCGTTGCCTTTCATTCTTTCTTTTTCCCTCCTAAATTTAGTTTAGGCAAACGCAAAAGCTTTCCAACGAACAAACAAACAAACCACTTCCGATCGATTGAGACAAACACCACCTGCGTTGCGTGCTTGCTTTCCTTTGTGCTTGAAGATGCACCACAACCTCGCTAGGTTGTGGATTGNCTTGCTTGCGGTCTCAATCACCGCAGTTCAATGCAAAACTGACTCCCAAGATGTTGCGGCCCTTAACGTGATGTATACCAGCTTAAACTCTCCCTCAAAACTGAGTGGCTGGAAATCAAGTGGAGGCGATCCTTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGCTCATCTGTCACGGAAATAAATTTAGCTGACCTGGAACTTACTGGATCAATGGGCTACCAGTTGTCGAACTTAAAATCAGTTACCTACTTTGATTTGAGCAACAACAACCTCAAGGGTGAGTTACCGTATCAACTTCCTCCAAATGCTCGTCACATAGATCTTTCAAATAATGGCTTCACTGGAAGTGTACCTTATTCCATTTCTCAGATGAGTGACCTCGACTACCTAAATCTTGCACATAATCGGCTCAATAACCAGTTGGGTGATATGTTTGGGAGCCTCACTAAACTCAAACAACTGGATGTATCATTCAATTCACTATCAGGAAACCTGCCTCAGAGTTTAAAATCACTCAAAAGCCTCAAGAAGTTGCATCTGGAAGACAATCAATTTTCTGGTTCAGTAAATGTCCTTGCCAGCCTTCCACTTGAAGAATTGAATGTTGAAAACAACAAATTTACTGGTTGGTTCCCTGAGGAGTTAAAGGATATAGATAGCGTGGAAACTGGAGGAAATTCTTGGTCAACTGGGCCAGCACCTCCTCCTCCTCCTGGTACACCTCCTCTCAAACATTCCGCGAAAACTAATGAAAAATCTGTTGTAAGTGGAGTGGCTATAGCAGGCATAGCTTTTGGTGTGCTGGCAGTAATTATAATCATCGTTGCTCTTTCTAAAAGGAGGTCATCTTCACCTTCTTCACATTTTATCGATGAAGAGCGGCATAGCCAGCACAGATCTTTTACACCCCTTGCATCTCAGGAGCTATACAAAGATTCAGGTGCTGATGTCAGCAAAGAATACAAAGGATTTAAGTCAATGGATTCCACTTCAATTGACATAGAGACTTTACAAAAAACTCCATCAGTTGTTAGGTCATCAGCCTCTGATTGTGTGCAAACCTTTAATGACAATGAGTTTGCAAATCGTCTAAATTCTAAAAGAAGCACATCAATCCGTTGTACTACTTTTTCACTGGCAGAGTTGCATACTGGTACTGCTAATTTTGCTTCAGGTCGACTTCTTGGCGAAGGATCCATTGGACNTGTTTATCGTGCCAAATATGCTGATGGAAAGGTATTTGCTGTAAAAAAAATCAACCCTTCACTTTTTAATGAGGCTCCTCCTGAGGAATTCTCTCAGTTTGTTTCCAGCATCTGCAAACTTCATCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCGCATGTTAATATATGATTATTACAGAAATGGCTCTCTCCATGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACTGCTCGGGCTGTCGAGTACCTACATGAAATTTGTTCTCCACCTTCAGTTCACAAGAATATCAAGTCCTCCAATATCTTGCTTGATACGNATCTGAATCCCCGTCTCTCAGACTGTGGTTTGGCATCCTTCCACCAGCGTACTAGTCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCTTATACCCTGAAGAGTGATATATACAGTTTTGGGGTAGTCATGCTGGAACTTTTGACAGGTCGAATGCCTCTAGACAGTTCAAAGCCAAAACCAGAGCAATGTCTCGTTCGTTGGGCTACCCCGCAGCTTCATGACATCAATGCGGTGGAGAAAATGGTGGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTCCGATTTGCTGACATCATCGCCCTTTGTGTTCAGTCTGAGCCCGAATTTCGGCCACCTGCGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAACGTTCAAGTCTGAAAATGAGAGAGGATCTTGGTGTCTTTGGTCGGATGGATGATTATGATGACTGATCCATTCTAATGAATGTCCCGTCACATATAGAGTGAAGACACCCCTGCCACCCTAACTTCTTACATGGGAATGTCCATACATGTACTTTGTCGAACTTTCAGTGCTTCCAGCGTTTTTCTTTTTCTTTTTTTTTAATTTTTATTTTTAAAGTAGTTGTAGGTTGTAGGAGAAAAGCTTGTGCAAAATTATGAAGACTTATTTTTTGGGACAGTTTTAGGAAGATAAATTGTTGAGGTGTGTGAAAACCAAAAGGATTTAATTACTATGCACAGTAAATGTAGAAAGATTTTACGTAGACATCNAATNATATCTNACTATATAAATATTTGTAGAGATAATTTAGGAAAGAATATTGTTAGGTGGCACCATGGTGTGATATGATTGGATGCATGTGTAAAACAATTTTACACTGACAGTGCATAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01733	48140	57517	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001733s00027629.1	PF08263.7	LRRNT_2	26	66	2.50E-08
Glyur001733s00027629.1	PF00560.28	LRR_1	117	135	1.2
Glyur001733s00027629.1	PF13855.1	LRR_8	140	197	1.50E-08
Glyur001733s00027629.1	PF07714.12	Pkinase_Tyr	405	669	2.00E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.024
SRR1783600	control	3.978
SRR1783602	moderate drought stress	8.165
SRR1811619	moderate drought stress	8.051

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.368
DRR006520	Root Summer glycyrrhizin high producing strain	8.078
DRR006521	Root Winter glycyrrhizin high producing strain	7.492
DRR006522	Root Winter glycyrrhizin high producing strain	7.409
DRR006523	Root Summer glycyrrhizin low producing strain	2.733
DRR006524	Root Summer glycyrrhizin low producing strain	2.710
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.637

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.983
SRR2868004	Drought Stress (root)	7.117
SRR2967015	Control (root)	8.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.118
SRR9715740	Leaf	3.905
SRR9715741	Leaf	5.045
SRR9715739	Root	0.520
SRR9715742	Root	1.411
SRR9715743	Root	1.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.838
SRR8749028	MeJA induced 9h	5.385
SRR8749029	MeJA induced 9h	2.925
SRR8749030	Uninduced	4.770
SRR8749031	Uninduced	3.237
SRR8749032	Uninduced	3.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.033
SRR8400027	Control - Root	5.127