Gene detail

Gene detail information of Glyur001733s00027628.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78950.1	0	Terpenoid cyclases family protein
NR	ADE88148.1	0	beta-amyrin synthase [Glycyrrhiza uralensis]
COG	YP_004916060.1	3.00E-154	(S)-2,3-epoxysqualene cyclase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|Q9MB42\|BAMS_GLYGL	0	Beta-amyrin synthase
trEMBL	tr\|D7P7W7\|D7P7W7_GLYUR	0	Beta-amyrin synthase {ECO:0000313\|EMBL:ADE88148.1}

Sequence

Transcript Sequence

>Glyur001733s00027628.1
CACGAATGGCTCTTTCACGAGTCACTCTCCAAATCAATTGAGATTCAACAGTGTTGGTGTTGAGCGTCACCTGCTCTGCTCTGCTCTGCTCTGCTTGCTTTAAAACTCGTTTAATTTGTGGAGACTAGCTGTGTGATTCAGGTAAGCTTATAGTTCAAAAGTTCAGCACCGGATCAATCTCAAGACACACAAATTAATCTCACGGATGGAGTGGAGGAGGTAGCTAGCACTTTCAATTGATTCAAGCATTAAGGCGGGGATTGTAATAATAATAATAATAATAGAATAGAATACTAAGAAGAAGAATCAGAAGAGGAAGGAAGATGTGGAGGCTGAAGATAGCGGAAGGAGGGAAGGACCCATACATATACAGCACAAACAACTTCGTGGGGAGGCAGACATGGGAGTATGATCCCGNTGGTGGGAGTGCCGAGGAGAGAGCTCAGGTTGATGCCGCTCGTCTCCATTTCTATAACAACCGCTTCCAGGTCAAGCCCTGTGGCGACCTCCTTTGGCGTTTTCAGATTCTGAGAGAAAATAACTTCAAACAAACAATAGCTAGCGTGAAGATAGGAGANGGAGAGGAAATAACATACGAAAAGGCGACAACGGCGGTGAGAAGGGCTGCACATCACCTATCCGCATTGCAGACCAGCGATGGCCATTGGCCTGCTCAAATTGCAGGACATCTTGATTCGGTATTCCCAGAAGAGTATCGCAAAGAGATTCTTCGTTACATATACTATCACCAGAATGAAGATGGAGGGTGGGGGCTACACATAGAGGGTCACAGCACCATGTTTTGTACTGCACTCAACTATATATGCATGCGAATTCTTGGAGAAGGGCCCGATGGGGGTCAAGACAATGCTTGTGCTAGAGCAAGAAAGTGGATTCATGATCATGGTGGTGTAACACATATACCTTCATGGGGAAAAACTTGGCTTTCGATACTTGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCTGAGTTTTGGATCCTGCCTTCATTTCTTCCTATGCATCCAGCTAAAATGTGGTGTTATTGCCGATTGGTATACATGCCTATGTCTTACTTGTATGGGAAAAGGTTTGTGGGTCCAATCACACCACTCATTCTACAGTTGAGAGAAGAACTCTTTACTGAACCTTATGAAAAAGTTAATTGGAAGAAAGCACGTCACCAATGTGCAAAGGAAGATCTTTACTATCCCCATCCTTTGTTACAAGATCTGATATGGGATAGTTTATACTTATTCACTGAGCCACTTCTGACTCGTTGGCCTTTCAACAAGCTGGTTAGAGAAAAGGCCCTTCAAGTAACAATGAAGCATATCCACTATGAAGATGAGACTAGTCGATACATAACCATTGGGTGTGTGGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCGGATTACTTATGGGTTTCGGAAGATGGAATGACCATGCAGAGTTTTGGTAGCCAAGAATGGGATGCTGGTTTTGCCGTTCAAGCTTTGCTTGCCACTAACCTAGTCGAGGAAATTGCTCCCACACTTGCCAAAGGACATGATTTCATCAAGAAATCTCAGGTTAGGGACAACCCTTCAGGAGATTTTAAGAGCATGTATCGTCATATTTCTAAAGGCTCATGGACCTTCTCCGATCAAGACCATGGATGGCAAGTTTCTGATTGCACAGCAGAAGGTTTGAAGTGTTGTCTACTTTTATCAATGTTGCCTCCAGAGATTGTGGGGGAAAAGATGGAACCTGAAAGGTTATATGATTCAGTCAATAGTAAAAAGGGTGGTTTATCAGCGTGGGAGCCAGCAGGAGCTCAAGAATGGTTAGAACTACTCAATCCCACGGAATTTTTTGCGGACATTGTAGTTGAGCATGAATACGTTGAGTGCACTGGATCAGCAATTCAGGCACTAGTTCTGTTCAAGAAGCTATATCCAGGGCATAGGAAGAAAGAGATAGAGAATTTCATTGCCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAATTGGGGAGTTTGCTTCACTTACGGTTCTTGGTTCGCACTTGGTGGTCTTGCAGCTGCTGGCAAGACTTTTGCCAATTGTGCTGCTATTCGCAAAGCTGTTAAATTTCTTCTCACAACACAGAGAGAGGATGGTGGATGGGGGGAGAGCTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTTGAAGGAAGTCGATCAAATGTTGTACATACTGCATGGGCCCTTATGGGTTTAATTCATGCTGGCCAGGCAGAGAGAGACCCTGCTCCTCTTCACCGAGCTGCAAAATTGATCATCAATTCCCAATTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACGGGAGTATTCATGAAAAATTGTATGCTGCATTACCCAATGTATAGAGATATTTATCCAATGTGGGCTCTAGCTGAGTATCGTAGACGGGTTCCATTGCCTTCCACTCCAGTTTAACTTAAAAGCTGTGTGAGCACAAAAAGGACAAAGCCATATATCAATAAAGAACCATGCAGGCAAATTAAATCAAATCAAACAAGTCGTACAATCAAGCTTCATTTCCTACATATATAATATATATTGATATATTTTTGTGTCATGTGTTTTTTTTTTATGGTGGGCTTTTTTGTGTCATATGTTGACATATGCATGTATAGATGTTCCTCCACATTTTGCTTTCTAAAAAGGTTGTCTAACTCCAAATAGAATGAGAGTTCAAACTTCAAACAACCGAATCGTGTTTGCCGTAGGGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01733	36493	44214	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15813	LUP4	EC:5.4.99.39	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001733s00027628.1	PF00432.16	Prenyltrans	131	173	1.80E-08
Glyur001733s00027628.1	PF13243.1	Prenyltrans_1	569	638	5.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	157.314
SRR1783600	control	159.917
SRR1783602	moderate drought stress	48.755
SRR1811619	moderate drought stress	48.359

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.270
DRR006520	Root Summer glycyrrhizin high producing strain	73.958
DRR006521	Root Winter glycyrrhizin high producing strain	0.274
DRR006522	Root Winter glycyrrhizin high producing strain	0.267
DRR006523	Root Summer glycyrrhizin low producing strain	4.969
DRR006524	Root Summer glycyrrhizin low producing strain	5.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.139

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	667.065
SRR2868004	Drought Stress (root)	272.719
SRR2967015	Control (root)	262.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.700
SRR9715740	Leaf	1.375
SRR9715741	Leaf	3.390
SRR9715739	Root	55.943
SRR9715742	Root	275.229
SRR9715743	Root	226.048

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.391
SRR8749028	MeJA induced 9h	0.787
SRR8749029	MeJA induced 9h	0.609
SRR8749030	Uninduced	0.377
SRR8749031	Uninduced	0.887
SRR8749032	Uninduced	1.118

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	383.650
SRR8400027	Control - Root	352.984