Gene detail

Gene detail information of Glyur001733s00027622

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78915.1	4.00E-118	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003529421.1	0	PREDICTED: uncharacterized protein LOC100790462 [Glycine max]
COG	YP_007125123.1	5.00E-25	hypothetical protein Mic7113_6123 [Microcoleus sp. PCC 7113]
trEMBL	tr\|I1KG23\|I1KG23_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G00360.1}

Sequence

Transcript Sequence

>Glyur001733s00027622.1
AAAGAAACGACATTTTCCCTTTTCATGGACGATTGACAGTGAGAATTGTATGTACGGGGGTAGAAGACGTATTTATAATCTCAGAATTTCAAAGAGAGGGAAAGTAACAAACCTTATCATCGCTGTTGCTCGAAATTTCCATTTTGTTGGGAAGAGAAGAGAAAACTGATAAACAACTCTTGTGAGTTCTCTGATAACAGTGTTATTATCATCATCATCATTCATGTGGACTACAAATATAAATAGTACAGTAATGTCAATCAGAAGCAGCAGCGGTTTCCTTTGGTTTCGAATAAATTGCTCCTCTGAGTCGAAGCCAGGGCGTGGTTTCGGAGAAAACAGGATTAAGACCAGCAAAGCTGACAAGGGTTCGATGTCGCAGCAGCAAAGCAGCAGGGGACAGTCTCGCCCTGTAGAGGCACCCCGTTTAAGTTCACAGTTTGGCATGAAATCTAGAAGCAACTCTTTGGATGTTGACTTTGAAGAACGGCTGAAAGCAGTTAGAAGGTCAGCACTAGAGCAAAAGAAGGCAGAAGAGGTAAAAGAGTTTGGTGCAATTGACTATGATGCACCAATTTCTTCAGACAAGAAGACAATTGGCTTTGGTACCAAGGTTGGAATAGGTTTAGCTGTTGTGGTCTTCGGNCTGGTTTTTGCTTTGGGAGATTTTCTTCCATCAGGAAGTGTGAGTCCCAATGAAGACAGTGCTGTGGTCAATAATAAATTGTCAGAGGAGGATAAAGCTACTCTTCAGAGTAGGCTTAAGGAATTTGAAGCGACATTAAGTAACTCCCCAAGAGATCCTACTGCTCTTGAAGGAGCTGCAGTAACTTTGGCAGAACTAGGGGAATATGCAAGAGCTGCTTCTCTACTTGATGAGTTGACAAAGGAAAAACCAAATGATGCTGATGCTTTTCGTTTGCTTGGGGAAGTTAAGTATGAACTCAAAGATTATGAAGGGAGCATTGCTGCATATAAAAATTCAGCAAAGGTGTCTGAAGATATCAACTTTGAAGTTCTTCGTGGCCTTACCAATTCATTACTTGCTGCGAAGAAGCCAGATGAGCGTCTTGGTTCAGAAAACCTCAGCAAAAAATCTGATAGCAGCCCAACAGACTCACAGAAGCTGGATCCAGTCCAAGTTGAATTACTTCTAGGGAAAGCCTATTCAGATTGGGGCCATGTNAGTGATGCTGTAGCTGTTTACGATCAGCTCATATCTACTCACCCTGATGATTTCCGTGGATACTTAGCTAAGGGAATCATCTTAAAAGAAAACAAAAACATTGGAGATGCAGAGAGGATGTTCATACAGGCTAGGTTTTTTGCNCCAGATAAAGCTAAAGCACTTGTGGACCGTTATTCAAGATAATAGCTTATATTGGCATTAATTATGAAGGTATGCTTTGTATAANAGAAATGATATGGTCTTTAACTAGGTGACATAAAAAAGGCCTCTATCCATTTAAGGTTGCAGCTGTCAGCAATGCATACCCATCTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01733	5624	12518	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001733s00027622.1	PF13432.1	TPR_16	201	255	4.40E-08
Glyur001733s00027622.1	PF13174.1	TPR_6	309	337	0.19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.167
SRR1783600	control	4.270
SRR1783602	moderate drought stress	2.337
SRR1811619	moderate drought stress	2.441

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.252
DRR006520	Root Summer glycyrrhizin high producing strain	9.569
DRR006521	Root Winter glycyrrhizin high producing strain	3.234
DRR006522	Root Winter glycyrrhizin high producing strain	3.406
DRR006523	Root Summer glycyrrhizin low producing strain	10.893
DRR006524	Root Summer glycyrrhizin low producing strain	10.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.622
SRR2868004	Drought Stress (root)	11.828
SRR2967015	Control (root)	10.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.314
SRR9715740	Leaf	15.814
SRR9715741	Leaf	10.948
SRR9715739	Root	1.388
SRR9715742	Root	2.922
SRR9715743	Root	2.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.709
SRR8749028	MeJA induced 9h	12.501
SRR8749029	MeJA induced 9h	9.138
SRR8749030	Uninduced	34.635
SRR8749031	Uninduced	25.075
SRR8749032	Uninduced	13.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.717
SRR8400027	Control - Root	10.770