Gene detail

Gene detail information of Glyur001732s00023319

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10380.1	1.00E-21	Putative membrane lipoprotein
NR	KEH20808.1	5.89E-139	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
Swissprot	tr\|Q9LZM4\|WAKLQ_ARATH	3.00E-07	Wall-associated receptor kinase-like 20 (Precursor)
trEMBL	tr\|A0A072TVA7\|A0A072TVA7_MEDTR	2.00E-139	Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313\|EMBL:KEH20808.1}

Sequence

Transcript Sequence

>Glyur001732s00023319.1
ATGGCACCACCACCACTACCACCACCACATCTCAACCTTTTCCTCATCCTCCTCATGTTGTCATCGACACCATCCTCCTCNTCATCATTATCATCCCCGGTATGCCGCGACACGTGTGGGTCAGTACAGGTGAAGTACCCATTCGGAACAGGTCCAGGGTGCGGGTCCCCTNTATTCAACCAATACATAACCTGCACATCCAGTGACCAACTCATACTGAAGACCCACACCGGATCATACCCCATCACTTCCATATCCTACACCACCACCACCATCATCCTCACCCCACCCCACATGTCCACCTGCACCACCATGCAACCCCTCTACCCTTCCTCCTCCAACAACTTCGGCCTTGACTTAACCTCCCCTTTCCAAATCGGTTCCTCCACCTTCATCCTCCTATCCTGCACCCACCCACACCCAATAATAACCCCCCAAATCTGTGACCCTTCCTTTGATTACCTCTGTGCTTCAATTTACTCTTGCCCTGCAGTGATCCATCTTGGTTTGCCTCTCTTCCCTCCTCCAACAAACACTTGCTGTGTGTACTCTCCCGCTAACCTCGACGGTGAGGGTGAGTTGGATCTCCTTGAGATTGGGTGTGGTGCTTATACTTCTGTTGTGTCGCTTGGGGATAACCCAACTGATCCTACCCATTGGGTTTATGGTGTGGCCTTGAAATATTCCCATGGTGCGATTGATAACAACTTTGTCAGCACCAAGTGTAGTAGCTGTGAGAGTAGTGGTGGTGTTTGTGGATTTGCTCCACCGGGAAATGGGTTTGTTTGTGTTTGTAAAAGTGGATTTAATACTAGCCTTGATTGCTCCGGTACTTATAACCAGAACCAGGGTTACCTTTGGGATNACTCTGTCTCTCCTCCCTGTTTCTCCACTACCCCTGGGAATGTTTGGAGTTTCGTTTTGGCTGGTATCATTTTGAGCTTGGNGTAATCAGAGATGGATTGCTGGGATGATTATTAGCTAGCACCAGTTAGGTCATTCACTGGAGGACATTCTCAATGCGCAAAAGTTGCTTTAGGAAAGTGCCTGCACTTAAAGAAAAGTGTGGGGAATAAAGGCATTGAGCATCGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01732	11786	13340	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001732s00023319.1	PF13947.1	GUB_WAK_bind	33	136	3.30E-14
Glyur001732s00023319.1	PF14380.1	WAK_assoc	238	267	9.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.954
SRR1783600	control	9.125
SRR1783602	moderate drought stress	9.569
SRR1811619	moderate drought stress	9.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.224
DRR006520	Root Summer glycyrrhizin high producing strain	9.188
DRR006521	Root Winter glycyrrhizin high producing strain	0.709
DRR006522	Root Winter glycyrrhizin high producing strain	0.594
DRR006523	Root Summer glycyrrhizin low producing strain	14.856
DRR006524	Root Summer glycyrrhizin low producing strain	14.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.070
SRR2868004	Drought Stress (root)	9.151
SRR2967015	Control (root)	14.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.918
SRR9715740	Leaf	7.413
SRR9715741	Leaf	10.910
SRR9715739	Root	8.288
SRR9715742	Root	15.624
SRR9715743	Root	14.862

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.130
SRR8749028	MeJA induced 9h	0.092
SRR8749029	MeJA induced 9h	0.444
SRR8749030	Uninduced	0.029
SRR8749031	Uninduced	0.140
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.616
SRR8400027	Control - Root	5.538