Gene detail

Gene detail information of Glyur001732s00023317

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39970.1	2.00E-97	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	KEH20805.1	3.15E-151	haloacid dehalogenase-like hydrolase [Medicago truncatula]
COG	YP_004463328.1	5.00E-35	HAD superfamily hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q680K2\|GPPL1_ARATH	4.00E-123	Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 (Precursor)
trEMBL	tr\|A0A072U4Q2\|A0A072U4Q2_MEDTR	1.00E-151	Haloacid dehalogenase-like hydrolase {ECO:0000313\|EMBL:KEH20805.1}

Sequence

Transcript Sequence

>Glyur001732s00023317.1
GGGAAATGGCAATGCAGAGCCACACAAAAATAGAGAGTGATCAATAAAAGTGATGGAGATGGTGTGTGTGTGATGAGGAATGGTGAATGGACATGGCCTCTACTCTAACTCTTTCCCTCTCTCCCTCCACCGCCACANCCACCTCCCGTTCCTATCTCTCCCACACCAAACACGGGTTTCGATATCCCAGAATTAAGTTACCCTCTTCTTCCAAGCACCACCACCATCGTGTCTTCTCAGCCTCAGCTTCAGCTTCATCTTCATCTTCATCTTCATCTTCATCTTCGCTTGAAGCTCTCATATTTGACTGTGACGGTGTCATCCTTGAGTCCGAGCACTTGCATCGCCAGGCCTATAACGACGCCTTCCTTCACTTCAATGTTCGCTGCCCCTCTTCCTCTTCTTCTCCCCAACCACTCAACTGGGGCATCGAATTCTACGATGAACTCCAGAACCAAATCGGTGGAGGCAAACCCAAAATGCGATGGAGCATGGGTGGCCTTCCTCCACGTTATTCGATACGCCTCCAACTAATGATGAGGATCGAGCCAAGATTGGAAGACAGAGAGATACAAAGATATAATCAAGTAAAACCCAGACCTGGAGTTTTGAGATTGATGGATGAGGCCAGAGATGCAGGGAAAAAGCTAGCTGTTTGCTCTGCAGCAACTAAAAGCTCAGTTATTCTCTGTCTTGAAAACCTTATTGGAATCGAGCGCTTTCAAAGCCTTGATTGCTTCCTTGCTGGTGATGATGTAAAGGAAAAGAAGCCCGACCCATCAATATACTTGACAGCTTCCAAGAAGCTGGGTGTACCAGAGAAAAACTGCTTGGTGGTAGAGGATAGTGTTATTGGGTTACAGGCAGCAACACAAGCAGGGATGTCCTGTGTAGTTACGTACACATCTTCCACAGCTGACCAGGATTTCAAAGAGGCCATAGCAATCTACCCTGACTTGAGTAACGTAAGATTGAAGGATTTGGAATTACTACTTCAAGATGTAGTAGCTGCTAAATAGGAGAATTGCTTGTCTTGGAAATGTTACTATATCAGCTGCCTTGGATTGGTTTGTCAGTAACACGGGTTGAATATTTGATGTTTACCACAAGGCTGAGGTCTTGTGTATTTTTTCACATGTTTTATTATATTCATTGACAACCGATGTATTTATTCTCAAAAAAAAAAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01732	6149	9366	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001732s00023317.1	PF13419.1	HAD_2	71	269	9.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.279
SRR1783600	control	9.101
SRR1783602	moderate drought stress	5.367
SRR1811619	moderate drought stress	5.578

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.159
DRR006520	Root Summer glycyrrhizin high producing strain	8.258
DRR006521	Root Winter glycyrrhizin high producing strain	2.369
DRR006522	Root Winter glycyrrhizin high producing strain	2.478
DRR006523	Root Summer glycyrrhizin low producing strain	4.417
DRR006524	Root Summer glycyrrhizin low producing strain	4.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	314.832
DRR006526	Leaf Summer glycyrrhizin high producing strain	306.660

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.102
SRR2868004	Drought Stress (root)	9.561
SRR2967015	Control (root)	7.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	130.275
SRR9715740	Leaf	170.598
SRR9715741	Leaf	120.724
SRR9715739	Root	1.924
SRR9715742	Root	2.802
SRR9715743	Root	3.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.014
SRR8749028	MeJA induced 9h	2.837
SRR8749029	MeJA induced 9h	3.957
SRR8749030	Uninduced	2.009
SRR8749031	Uninduced	1.105
SRR8749032	Uninduced	1.919

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.881
SRR8400027	Control - Root	8.567