Gene detail

Gene detail information of Glyur001731s00039578

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02230.2	9.00E-97	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_006572870.1	1.11E-180	PREDICTED: uncharacterized protein LOC100796466 isoform X1 [Glycine max]
COG	YP_004305363.1	1.00E-19	HAD-superfamily hydrolase [Polymorphum gilvum SL003B-26A1]
trEMBL	tr\|I1J6W9\|I1J6W9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G24360.1}

Sequence

Transcript Sequence

>Glyur001731s00039578.1
ATGGAGTACGAGGACCATTTAGATGATACTTTGTATCCCCTAAGATCTGGCCTTGCAAAATCATGTCTCCAAAACATTAAAGATTACATGGTGGAGAAGCTTGGCATAGAACCAAGCAAAATTGATGACTTGTCAAACCTCCTTTACAAGAACTATGGAACAACTATGGCTGGTCTAAGGGCAATTGGGTATGACTTTGACTATGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAACTTAAAACCAGACCCAGTTCTGAGGAACCTGTTGCTGAGCTTGCCTTATAGGAAACTTATCTTCACAAATGCAGACAAAGTCCATGCTGTTAAGGCACTAAGCAGACTTGGANTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAGAGCAGTGTTTCTGATGATGAAGATGACATTGAGTTTTTGGGCTCAACAAGAACTAGAACTAGTTCAACCACTAGTAATAATTATAATGGTGCAAGCACATCTCAAATCTTTGACATCATTGAGCATTTTTCTCAGCCCAATCCAAGTGCAGTTTTGCCCAAGACACCAATTGTTTGCAAGCCATCAGAAAATGCCATTGAATTTGCCCTCAAGATAGCCAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGGAACATACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGTACATCTCAGAGAGTTAAAGGTGCAGATTATGCCTTGGAAAGCATTCACAACCTTAGGGAAGCAGTGCCTGAACTATGGGANGCTGAGATAAAATCAGAAGTTGCATGCCCTGGGAAGCTAACATCAGTCACAGCTTGAGCTTGAGACATATATATGTGCAAGGAAAGGAAGCACCACCCTTTAATGTTGTTCAATTAATTAATAAATTCAAATTCCAACCACCAGAGAAAAAAAAGAAAAAAGAACAAAAAATGAGAAGCCCACAGGGATTCCCCTGCTTCAAATTGTAGTTGATGTAGATGCTTTGTTAAGTTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01731	9089	11344	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001731s00039578.1	PF13419.1	HAD_2	7	135	8.90E-09
Glyur001731s00039578.1	PF13242.1	Hydrolase_like	199	254	5.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.546
SRR1783600	control	16.714
SRR1783602	moderate drought stress	12.284
SRR1811619	moderate drought stress	12.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.604
DRR006520	Root Summer glycyrrhizin high producing strain	4.380
DRR006521	Root Winter glycyrrhizin high producing strain	15.563
DRR006522	Root Winter glycyrrhizin high producing strain	15.216
DRR006523	Root Summer glycyrrhizin low producing strain	10.981
DRR006524	Root Summer glycyrrhizin low producing strain	11.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	115.653
SRR2868004	Drought Stress (root)	191.873
SRR2967015	Control (root)	136.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	105.827
SRR9715740	Leaf	73.703
SRR9715741	Leaf	87.530
SRR9715739	Root	0.662
SRR9715742	Root	6.319
SRR9715743	Root	6.541

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	196.032
SRR8749028	MeJA induced 9h	465.126
SRR8749029	MeJA induced 9h	418.136
SRR8749030	Uninduced	677.414
SRR8749031	Uninduced	888.135
SRR8749032	Uninduced	513.480

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.435
SRR8400027	Control - Root	30.473