Gene detail

Gene detail information of Glyur001725s00037765.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17750.1	1.00E-21	heat shock factor 1
NR	AGJ83756.1	1.07E-48	heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprot	tr\|Q6F388\|HFA2E_ORYSJ	3.00E-26	Heat stress transcription factor A-2e
trEMBL	tr\|R9R6C4\|R9R6C4_9FABA	4.00E-49	Heat stress transcription factor A-4a-like protein {ECO:0000313\|EMBL:AGJ83756.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01725	37540	38303	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001725s00037765.1	PF00447.12	HSF_DNA-bind	1	101	6.50E-20

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.139
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.504
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.876
DRR006522	Root Winter glycyrrhizin high producing strain	0.466
DRR006523	Root Summer glycyrrhizin low producing strain	0.724
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.051

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.038
SRR2868004	Drought Stress (root)	0.020
SRR2967015	Control (root)	0.000

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.076
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.090
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.000