Gene detail

Gene detail information of Glyur001725s00037759

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G11290.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004499782.1	PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cicer arietinum]
Swissprot	tr\|Q3E6Q1\|PPR32_ARATH	Pentatricopeptide repeat-containing protein At1g11290
trEMBL	tr\|I1KFK5\|I1KFK5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G46880.1}

Sequence

Transcript Sequence

>Glyur001725s00037759.1
ATGAGCTCTCAGCTCTTATCACTACACTCTGCACTTCCACTTCCCAACACCAAAAACTCATACCCCAAAGCCACCGCAAAAACAACAACAACAACAACAACCCCTCTCTACCAAAGAATCTTCATCCCTACACATGTCTATAGGCACCCTTCAGCTATACTCTTAGAACTCTGCACTTCCNTTCAAGAGCTTCNCCAAATCATGCCCCTCATCATCAAAAACGGCTTCTACAATGAGCACTTGTTTCAGACCAAGCTTGTGAGTTTGTTCTGCAAATATGGCAGCATCAGTGAAGCAGCTCGTGTCTTTGAGCCTGTTCAGCACAAGCTGGATGTGCTTTACCACACCATGCTCAAAGGGTATGCAAAAAACTCAACTTTATGTGATTCCTTGTCCTTTTACCATAGGATGCAGTGTGATGAGGTTAGGCCTGTGGTGTATGACTTTACTTACTTGTTGCAATTGTGTGGAGAGAATTTGGACCTCAAAAGGGGTAGAGAGATTCATGGGCAGCTAATAGCTAATGGGTTTGAGTCCAATTTGTTTGCTATGACTGCTGTTGTGAACTTGTATGCAAAGTGTAGGCAGATTGAGGATGCGTATAAGATGTTTGAGAGAATGCCCAAGAAGGATTTGGTTTCTTGGAATACGGTTGTTGCGGGGTATGCGCAGAATGGCTTTGCTAGGAGAGCTGTGCACTTGGTTCTTGAGATGCAGGAAGCTGGCCAGAAGCCCGANTCCATCACGTTGGTCAGTGTTTTGCCTGCTGTGACGGATATCAAGGCTTTGAGAATTGGAAGGTCTATTCATGGTTATGCCTTCAGATCAGGATTTGAATCGATGGTGAATGTTTCGACGGCGCTTCTAGATATGTACTTCAAGTGTGGATCAGTAAAGACTCCAAGGTTGGTTTTTGAGAGGATGGGCAGCAAGAGTGTTGTCTCTTGGAATACCATGATTGATGGTTATGCACAAAATGGTGAATCTGAAGAAGCGTTTGCAACTTTTCTGAAGATGTTGGATGNAGGGGTGGAGCCTACAAATGTTAGTATGATGGGTGCATTACATGCTTGCTCTAATTTAGGTGATCTTGAACGAGGGAGATTTGTTCACGGATTAATTGATCAGCGGAAGNTTGGTTCTGATGTGTCAGTTATGAACTCTTTGATATCCATGTATTCGAAGTGTAAGAGAGTTGATATCGCAGCCTCGGTATTTGGTAATTTGAAAGGGAAAACAAACGTCACNTGGAATGCCATGATATTAGGTTATGCACAAAATGGGTTTGTACATGAAGCTCTGGATCTATTCTGTACCATGCAAGCTCAAAACATTAAACCTGATTCCTTTACATTTGTGAGTGTAATCACTGCTCTAGCAGATTTNTCAGTCACCCNCCAAGCTAAGTGGATTCACGGACTTGCAATAAGAACCTTTATGGACAAGAATGTCTTTGTTGCTACTGCTCTTGTTGACATGTATGCAAAATGTGGAGCCATCCAAANGGCAAGAACGCTTTTTGACATGATGCAAGAGCGACACGTGATAACATGGAATGCAATGATAGATGGATATGGGACACATGGCCTTGGAAAAGCAGCTCTAGATCTCTTCAATGATATGCAGTTGGAAGCTGTTACTAAGCCAAACGATATAACATTTCTGTCTGTTATCTCAGCTTGTAGTCACTCAGGTTTTGTGGAAGAGGGTCTCTACTACTTCAAAATTATGAAAGAAACTTATGGCTTGGAGCCTGCAATGGATCACTATGGTGCCATGGTTGATCTCCTTGGTCGTGCTGGCAAGCTAGATGATGCTTGGAATTTCATCCGGGAGATGCCTATTGANCCGGGGATGACTGTATTAGGTGCAATGCTAGGTGCTTGCAAGATTCATAAAAATGTAGAATTGGGAGAGAAGGCTGCAGACAAACTATTTGAGTTAGACCCAGATGAGGGAGGGTATCANGTGTTGCTTGCCAACATGTATGCCTCTGCTTCAATGTGGGACAAAGTGGCCAAGGTGAGGACAGCCATGGAGAAGAAGGGGCTCCAGAAAACACCAGGNTGCAGTTTGGTGGAATTGAGAAACGAAGTTCACACATTCTACTCNGGAAGTACGAATCATCCGCAATCCAAAAGAATCTATGCCTTTNTACAGACTCTCGGTGATGAGATCAGGGCTGCTGGTTATGTGCCTGACATGAATTCAATTCATGATGTGGAAGAAGATGTGAAGGAACAATTGCTCAGTAGCCACAGTGAGAGGCTTGCTATTGCATTTGGACTTCTGAATACAAGTCCTGGTACAACCATACACATTAGGAAGAATCTAAGAGTTTGTGGNGATTGCCATGAAGCCACNAAGTANATTTCACTTGTGACNGGGAGGGAAATTATAGTTCGCGATTTACGTAGGTTCCATCATTTTAAGAATGGAAGCTGTTCTTGTGGGGATTACTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01725	1693	4158	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001725s00037759.1	PF01535.15	PPR	112	140	0.15
Glyur001725s00037759.1	PF01535.15	PPR	184	211	0.00097
Glyur001725s00037759.1	PF01535.15	PPR	213	242	7.10E-05
Glyur001725s00037759.1	PF13041.1	PPR_2	311	353	5.80E-10
Glyur001725s00037759.1	PF01535.15	PPR	386	410	0.12
Glyur001725s00037759.1	PF13041.1	PPR_2	414	460	1.50E-13
Glyur001725s00037759.1	PF13041.1	PPR_2	514	562	2.10E-11
Glyur001725s00037759.1	PF01535.15	PPR	589	613	0.012
Glyur001725s00037759.1	PF14432.1	DYW_deaminase	698	811	2.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.354
SRR1783600	control	1.369
SRR1783602	moderate drought stress	1.928
SRR1811619	moderate drought stress	1.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.152
DRR006520	Root Summer glycyrrhizin high producing strain	1.953
DRR006521	Root Winter glycyrrhizin high producing strain	0.898
DRR006522	Root Winter glycyrrhizin high producing strain	0.839
DRR006523	Root Summer glycyrrhizin low producing strain	1.909
DRR006524	Root Summer glycyrrhizin low producing strain	1.989
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.329
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.274

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.274
SRR2868004	Drought Stress (root)	0.739
SRR2967015	Control (root)	1.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.915
SRR9715740	Leaf	1.407
SRR9715741	Leaf	0.720
SRR9715739	Root	0.306
SRR9715742	Root	0.953
SRR9715743	Root	0.995

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.230
SRR8749028	MeJA induced 9h	1.067
SRR8749029	MeJA induced 9h	0.703
SRR8749030	Uninduced	0.078
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.139

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.338
SRR8400027	Control - Root	1.252