Gene detail

Gene detail information of Glyur001724s00040325.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31610.1	4.00E-24	Ribosomal protein S3 family protein
NR	XP_004501017.1	1.93E-29	PREDICTED: 40S ribosomal protein S3-1-like [Cicer arietinum]
COG	YP_004407069.1	3.00E-07	serine/threonine protein kinase with pasta sensor(s) [Verrucosispora maris AB-18-032]
Swissprot	tr\|Q9SIP7\|RS31_ARATH	2.00E-28	40S ribosomal protein S3-1
trEMBL	tr\|A0A067CYT4\|A0A067CYT4_CITSI	9.00E-30	Uncharacterized protein {ECO:0000313\|EMBL:KDO35864.1} (Fragment)

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01724	39	6991	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001724s00040325.2	PF07714.12	Pkinase_Tyr	10	81	3.30E-08
Glyur001724s00040325.2	PF03813.9	Nrap	62	138	8.30E-07

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.176
SRR1783600	control	0.188
SRR1783602	moderate drought stress	0.148
SRR1811619	moderate drought stress	0.211

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.409
DRR006520	Root Summer glycyrrhizin high producing strain	0.425
DRR006521	Root Winter glycyrrhizin high producing strain	0.490
DRR006522	Root Winter glycyrrhizin high producing strain	0.542
DRR006523	Root Summer glycyrrhizin low producing strain	0.076
DRR006524	Root Summer glycyrrhizin low producing strain	0.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.244

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.190
SRR2868004	Drought Stress (root)	1.065
SRR2967015	Control (root)	0.528

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.215
SRR9715740	Leaf	0.147
SRR9715741	Leaf	0.206
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.171
SRR8749028	MeJA induced 9h	0.401
SRR8749029	MeJA induced 9h	0.136
SRR8749030	Uninduced	0.121
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.766
SRR8400027	Control - Root	1.084