Gene detail

Gene detail information of Glyur001723s00036239.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05340.1	2.00E-107	Peroxidase superfamily protein
NR	XP_011080818.1	0	PREDICTED: uncharacterized protein LOC105163979 [Sesamum indicum]
Swissprot	tr\|P22195\|PER1_ARAHY	3.00E-163	Cationic peroxidase 1 (Precursor)
trEMBL	tr\|A0A068UD44\|A0A068UD44_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06406.1}

Sequence

Transcript Sequence

>Glyur001723s00036239.1
ATGAAAGAGAACGTCTCAGCTCAACTGTCCTCTAATTTTTACGCCAAAACTTGCCCTATTGTGCTTTCAACCATTAGAACAGAAGTAAACTCTGCTGTGAGCAAGGAGCGCCGCATGGGGGCCTCTCTGCTCCGTCTTCATTTCCATGATTGCTTTGGATGTGATGCATCAGTATTATTGGATGATACATCGAGTTTCACAGGTGAGAAGACAGCGGCTCCAAACGCTAATTCAATCAGAGGCTTTGAGGTAATAGACACCATCAAGTCTAAATTGGAGACCTTGTGCCCTGCTGTTGTCTCTTGCGCCGACATCCTCACTGTGGCAGCAAGAGACTCTGTTGTCGCTCTTGGTGGACCTAGTTGGACTGTGCCATTGGGTAGAAGAGACTCAACCACAGCAAGTTTAAGTTCTGCAAACTCAGACTTGCCAGCTCCCTCGTTGGATTTAAGTGGCCTTATCACTGCTTTCTCCAACAAAGGTTTCACAACCAAAGAAATGGTTGCTCTTTCAGGAGCACACACCATTGGGCAAGCGCAGTGTTCAACCTTCAGAACAAGGATATACAACGAGAACAACATAGATTCCTCATTTGCAAAGTCATTGCAAGCAAATTGTCCAAGCACAAGTGGTGACAGCAATTTGTCCCCACTTGACGCAACTAGTCCAAACACCTTCGACACTGCTTACTTCGTGAATTTGCAAAGCAAAAAGGGTGTGTTGCACTCAGATCAAGAGCTTTTCAATGGAGGATCCACGGATTCTCAGGTAAATTCTTATAGCAGCAACCCCGCGAGTTTTAGAGCTGACTTTGCCAATGCAATGGTTAAAATGGGGAATCTAAGCCCACTTACCGGCTCTATCTCAGCCCAGTTGTCCTCTAATTTTTACTCCACGTCGTGTCCTAATGTGCTTTCCACCATTAAGACAGCAGTAGATTCTGCTGTGAGTAGTGAGGCTCGCATGGGGGCATCCCTTCTTCGTCTCCATTTCCATGATTGCTTTGGATGTGATGCATCAGTACTGTTAGACGATACATCAAATTTCACAGGTGAAAAGACGGCATTTCCGAATGTTAATTCCTTGAGGGGTTTTGATGTAATAGACACCATTAAGTCTCAAGTGGAGAGCTTGTGCCCTGGTGTTCTTGGTGGACCTAGTTGGACAGTGCAATTGGGAAGAAGAGACTCAACCACAGCAAGTTTGAGTTCTGCAAACTCAGACTTGCCAGCTCCTACTTTGGATCTAAGTAAACTTATCACTGCTTTCTCCAACAAAGGTTTCACAACCACAGAAATGGTTGCTCTATCAGGATCTCACACAATTGGGCAAGCTAGCTGTACAAACTTCAGAACAAGGATATACAACGAGACCAACATAGATTCAACCTTTGCAAAATCATTGCAAGCAAATTGTCCAAGCACAGGTGGTGATAGCAATTTGTCCCCTTTGGACACCACTACTCCAAACACCTTCGACAATTCTTACTTCAAAAACTTGCAAAGCCAAAAGGGTCTCTTCCACTCAGATCAACAGCTCTTCAACAATGGATCCACAGACTCTCAAGTGAATGCTTATAGCACCGACTCTGCAAGTTTTGCAACTGACTTTGCAAATGCAATGGTCAAAATGGGGAACCTAAGCCCACTCACTGGCTCTAGTGGCCAGATTAGGACCAATTGCAAGAAAACCAACTGAGTACTCTTTTTTTTGGGCCTTTTTATTATATAATAGAGTTACTTTTATTGTTGCAATTGGCCAATTGCAGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01723	10621	21354	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001723s00036239.1	PF00141.18	peroxidase	26	262	4.30E-77
Glyur001723s00036239.1	PF00141.18	peroxidase	309	528	1.20E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.068
SRR1783600	control	5.154
SRR1783602	moderate drought stress	3.584
SRR1811619	moderate drought stress	3.603

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.284
DRR006520	Root Summer glycyrrhizin high producing strain	0.292
DRR006521	Root Winter glycyrrhizin high producing strain	2.727
DRR006522	Root Winter glycyrrhizin high producing strain	2.924
DRR006523	Root Summer glycyrrhizin low producing strain	0.311
DRR006524	Root Summer glycyrrhizin low producing strain	0.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.051
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.052

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.591
SRR2868004	Drought Stress (root)	9.190
SRR2967015	Control (root)	4.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.406
SRR9715740	Leaf	0.345
SRR9715741	Leaf	1.231
SRR9715739	Root	3.834
SRR9715742	Root	0.368
SRR9715743	Root	0.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	325.649
SRR8749028	MeJA induced 9h	163.064
SRR8749029	MeJA induced 9h	137.476
SRR8749030	Uninduced	7.502
SRR8749031	Uninduced	0.196
SRR8749032	Uninduced	1.744

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.534
SRR8400027	Control - Root	2.419