Gene detail information of Glyur001722s00041548


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G27160.11.00E-14Ribosomal protein S21 family protein
NRXP_002509528.13.26E-40structural constituent of ribosome, putative [Ricinus communis]
COGYP_001519829.12.00E-0730S ribosomal protein S21 [Acaryochloris marina MBIC11017]
Swissprottr|P82024|RR21_SPIOL2.00E-1230S ribosomal protein S21, chloroplastic (Fragment)
trEMBLtr|B9RBJ4|B9RBJ4_RICCO1.00E-40Structural constituent of ribosome, putative {ECO:0000313|EMBL:EEF50915.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold017224522748029+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001722s00041548.1PF01165.15Ribosomal_S21571134.90E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.402
SRR1783600control21.660
SRR1783602moderate drought stress10.728
SRR1811619moderate drought stress10.467

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.255
DRR006520Root Summer glycyrrhizin high producing strain24.669
DRR006521Root Winter glycyrrhizin high producing strain17.384
DRR006522Root Winter glycyrrhizin high producing strain16.419
DRR006523Root Summer glycyrrhizin low producing strain24.297
DRR006524Root Summer glycyrrhizin low producing strain24.448
DRR006525Leaf Summer glycyrrhizin high producing strain175.784
DRR006526Leaf Summer glycyrrhizin high producing strain172.164

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)23.925
SRR2868004Drought Stress (root)19.475
SRR2967015Control (root)25.371

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf170.012
SRR9715740Leaf167.487
SRR9715741Leaf135.226
SRR9715739Root14.932
SRR9715742Root14.452
SRR9715743Root11.552

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.630
SRR8749028MeJA induced 9h15.913
SRR8749029MeJA induced 9h20.237
SRR8749030Uninduced10.441
SRR8749031Uninduced4.981
SRR8749032Uninduced13.104

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root42.868
SRR8400027Control - Root43.583

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved