Gene detail

Gene detail information of Glyur001722s00041546

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27150.1	1.00E-101	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003547649.1	0	PREDICTED: F-box/kelch-repeat protein At3g27150-like [Glycine max]
COG	YP_004694031.1	2.00E-07	Kelch repeat type 1-containing protein [Nitrosomonas sp. Is79A3]
Swissprot	tr\|Q9LI89\|FBK70_ARATH	3.00E-123	F-box/kelch-repeat protein At3g27150
trEMBL	tr\|I1MLI4\|I1MLI4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G06160.1}

Sequence

Transcript Sequence

>Glyur001722s00041546.1
ATGAGAATTATTGAATTGTCACCCTCTGATGGCAATGGTTCTTCTTCAGCTGATGAACCTTTACCTCAGGATGCAGATTATAGTAATGTTCTTCAGTCTCTCAGTGATGAGCTAGAGACTTTGATCTTGGCTAGATTCCCAAGATCACAGCACTGGAAGCTGTGCTTCCTAAACAAGAGGTTCTTGGCTCTAACAAAGAGTGGTGAGATCTATAAAATCAGGAGAGAGCTAGGACTAAAAGAACCATCAGTTTTCATGCTAACAAGTGGTGAAAACAACTGGTGGGGAATGGATTGGCCTTTCAACTCCATTAGGAAGCTCCCTCCAATTCAATCAGATTACAACTTTGAGTTTGGTGATAAAGAGTCCTTCACTGCAGGGTCCCATTTATTGGTCTCAGGCAAGGAGATTGATGGTGCTGTTACTTGGAGGTATGATTCAAAAACCAATGAATGGCTCAAAGGGCCATTCATGATCAACCCAAGATGTCTCTTTGCATCAGCTACTTGTGGAACTTTTGCCTTTGTTGCTGGTGGTATTGACACAAAGACTTACACACAAGTCTTGGATTCTGCTGAGATATACAACTCTGAGAGCCAATCTTGGGAACCACTCCCAAAGATGAAGCTAAAGAGGAAATTCTGTTCTGGTTGCTTCATGGATAACAGGTTCTATGTTATTGGTGGACAAGATGAGAACCAAAAGGACTTAACTTGTGGGGAGTTTTTTGACCCCAAGGCAAAGACTTGGAACTTAGTACCCGATATGTGTAAGGACATTCCGGTTTCGGTTTCGCAGTCTCCGCCTCTTATTGCGGTTGCAAACAATGAGCTCTATACACTTGATGCTTCTTCCAATGAGCTGAAAGTGTATCTTAAAGGGAGTAATGAGTGGAAGAAGTTAGGGGTGGTTCCTGTGAGAGCTGATGCACAACGAGGTTGGGGTATAGCATTTAAGTCCCTTGGTGATGAGTTACTTGTTATTGGTGCACCTTGTGTTAACCAAACTACAGAACGTGCCTCAGCTATATATGCTTGTTGTCCTGATCCAAGTGTTGAGAAACTGAGGTGGAGGCAAATTGAGTGTGGCAGTACTATTCAGCTTAATCACTTCATCCGCAATTGTGCAGTGGTGATGGGAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01722	32096	33241	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001722s00041546.1	PF01344.20	Kelch_1	161	208	1.70E-08
Glyur001722s00041546.1	PF01344.20	Kelch_1	212	256	4.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.160
SRR1783600	control	3.832
SRR1783602	moderate drought stress	4.090
SRR1811619	moderate drought stress	4.075

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.001
DRR006520	Root Summer glycyrrhizin high producing strain	20.330
DRR006521	Root Winter glycyrrhizin high producing strain	10.506
DRR006522	Root Winter glycyrrhizin high producing strain	10.401
DRR006523	Root Summer glycyrrhizin low producing strain	27.002
DRR006524	Root Summer glycyrrhizin low producing strain	26.958
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.361
SRR2868004	Drought Stress (root)	30.400
SRR2967015	Control (root)	45.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.312
SRR9715740	Leaf	0.307
SRR9715741	Leaf	0.874
SRR9715739	Root	39.120
SRR9715742	Root	42.282
SRR9715743	Root	45.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.671
SRR8749028	MeJA induced 9h	16.193
SRR8749029	MeJA induced 9h	16.159
SRR8749030	Uninduced	16.329
SRR8749031	Uninduced	6.503
SRR8749032	Uninduced	5.918

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.474
SRR8400027	Control - Root	22.604