Gene detail information of Glyur001721s00042495 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59180.1 | 2.00E-47 | DNA-directed RNA polymerase II |
| NR | XP_004489626.1 | 4.25E-63 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cicer arietinum] |
| Swissprot | tr|P46279|RPB7_SOYBN | 2.00E-65 | DNA-directed RNA polymerase II subunit RPB7 |
| trEMBL | tr|C6SWZ3|C6SWZ3_SOYBN | 2.00E-63 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU13766.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01721 | 50742 | 59465 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.284 |
| SRR1783600 | control | 3.658 |
| SRR1783602 | moderate drought stress | 2.759 |
| SRR1811619 | moderate drought stress | 2.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.945 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.700 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.650 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.845 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.068 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.090 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.408 |
| SRR2868004 | Drought Stress (root) | 15.075 |
| SRR2967015 | Control (root) | 13.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.570 |
| SRR9715740 | Leaf | 1.903 |
| SRR9715741 | Leaf | 2.642 |
| SRR9715739 | Root | 0.832 |
| SRR9715742 | Root | 1.425 |
| SRR9715743 | Root | 1.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.056 |
| SRR8749028 | MeJA induced 9h | 0.877 |
| SRR8749029 | MeJA induced 9h | 0.954 |
| SRR8749030 | Uninduced | 2.000 |
| SRR8749031 | Uninduced | 1.077 |
| SRR8749032 | Uninduced | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.147 |
| SRR8400027 | Control - Root | 7.569 |