Gene detail information of Glyur001720s00031703 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54250.2 | 0 | cyclic nucleotide-gated cation channel 4 |
| NR | XP_007149641.1 | 0 | hypothetical protein PHAVU_005G086600g [Phaseolus vulgaris] |
| COG | YP_006439308.1 | 3.00E-25 | putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527] |
| Swissprot | tr|Q94AS9|CNGC4_ARATH | 0 | Cyclic nucleotide-gated ion channel 4 |
| trEMBL | tr|V7BX76|V7BX76_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01720 | 38814 | 59582 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001720s00031703.1 | PF00027.24 | cNMP_binding | 506 | 598 | 3.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.803 |
| SRR1783600 | control | 2.867 |
| SRR1783602 | moderate drought stress | 4.608 |
| SRR1811619 | moderate drought stress | 4.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.755 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.822 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.471 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.470 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.980 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.867 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.351 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.724 |
| SRR2868004 | Drought Stress (root) | 0.654 |
| SRR2967015 | Control (root) | 0.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.688 |
| SRR9715740 | Leaf | 5.088 |
| SRR9715741 | Leaf | 2.575 |
| SRR9715739 | Root | 2.733 |
| SRR9715742 | Root | 2.442 |
| SRR9715743 | Root | 2.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.030 |
| SRR8749030 | Uninduced | 0.031 |
| SRR8749031 | Uninduced | 0.036 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.798 |
| SRR8400027 | Control - Root | 1.189 |