Gene detail

Gene detail information of Glyur001720s00031701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54260.1	0	DNA repair and meiosis protein (Mre11)
NR	XP_003539581.1	0	PREDICTED: double-strand break repair protein MRE11-like [Glycine max]
COG	YP_002730770.1	4.00E-19	metallophosphoesterase [Persephonella marina EX-H1]
Swissprot	tr\|Q9XGM2\|MRE11_ARATH	0	Double-strand break repair protein MRE11
trEMBL	tr\|K7LWB6\|K7LWB6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G34750.2}

Sequence

Transcript Sequence

>Glyur001720s00031701.1
CCATTCCAGAGGTTGATACGACGGCGTTTTGCTTCCTTGGGGAATTAACACCCAAAAGTTTCTTCACAGTTCACACACTGCAACCACTTCCCTTCCCGTCGAGACTAGAGAGCATCCATGGAGGANGGTGAAGCTGCGAACACACTTCGCATCCTGATAGCGACGGATTGCCACCTCGGATACATGGAGAAGGACGAAGTGCGNCGGCACGACTCATTCCAAGCGTTCGAAGAGATTTGCTCCATAGCGGAGCAGAAGCAGGTCGATTTCATGCTACTCGGCGGTGACCTCTTCCACGAGAACAAGCCTTCTAGGTCAACCCTTGTCAAAGCCATCGAGATTCTCCGTCGCTATTGCCTCAACGATCGACCCGTTCCCTTCCAAGTCGTCAGTGACCAGACCCTCAATTTTCAGAACGCTTTTGGTCATGTAAATTATGAAGACCCTCACTTCAATGTTGGTTTGCCCGTATTTACCATTCATGGAAATCATGACGATCCTGCTGGCGTGGACAACCTTTCTGTAGTTGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTTGGTCAGATCACTCTCCACCCTATTCTTATCAAGAAGGGTTCAACAGCGGTAGCNCTGTATGGTCTAGGGAACATTAGAGATGAGAGGCTTAATAGGATGTTTCAAACACCACATGCTGTGCAGTGGATGCGACCTGAATCTAAGGAAGGGTGTCAAGTTTCTGATTGGTTCAACATTCTAGTACTTCATCAGAACAGAGTGAAAACAAATCCAAAAAATGCAATAAATGAGCACTTCCTGCCACGCTTCCTAGACTTCATTGTGTGGGGGCATGAGCATGAATGTTTGGTTGACCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCCCAACCGGGGTCATCAGTTGCAACATCACTTATTGATGGAGAATCGAAGCCAAAGCATGTACTTCTTCTAGAAATCAAGGGAAATCAGTATCGCCCAACTAAGATACCTTTAAAATCTGTGCGGCCTTTTGAGNATACAGAGATAATACTAAAAGATGAGCCTGATATTGATTCAAATGATCAAAATTCTATTCTTGAACATCTTGACGAAGTGGTCAGGAAGCTTTTAGAAAATTCTAGTAAGAAGGCTATCCATAGAGCAGAACTCAAGCTTCCACTAATACGTATCAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTCGGGAAGGTTGCAAACCCCCAAGACATTCTTATATTCTCAAAGGCTACAAAAAGGGACAAGGGTGCAGGTAAAATTGATGATTCAGAACGACTTCGACCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTGAAAATGGAGATACTTCCAGTTAATGATTTGGATATTGCATTACACAATTTTGTGAACAAGGATGATAAAATGGCATTTTACACTTGTGTTCAAAACAATATTGTTGAAACACGAACTAAAATTGCTAAGGATTCAGATAACCTGAAGTTTGACGAGGAAGACTTGATTGTTAAAGTTGGAGAGTGCTTGGAGGAACGTGTCAAGGAACGCTCCAAGGAACCCACACAGTTCACTGCTGGTGCTCAGTCATTGGAGGATTTCCGAGGCAGAAGTGCTGCTGGAGTTGGAAGTGCAGTTTCCTTCAGTGATGATGAAGATGCCATGCCAATATCTGGCTCAAAGCAAAGCACTAGAGGTTGGAAAGGATCATCTAGTGCATCTCAAACAACCACCAGAGGAAGAGGAAGGGGCAGGGGCAGAGGCAGAGGCAAGGATTCCANCACCTTGAAGCAGACAACCCTTGATGGAGCTCTAGGGTTTCGCCATTCTCAGAGGTCTGCATCAGTTGCTGCAGCAACTGCCATCCAAAGTGGTGCTGATGATGGGGATAATTTGCCTTCTGCTTCAAGTGATGATGCCAAACAAAATGCTGTGGAAGAGATTGATGACAGTTCGGAAAATGAATCCAAGCTACCAGGACGGAAAAGGGCTGCTCCAAAGGGAAGAGGTAGAGGTTCTGCACAGTCTTCTAAACGTGGAAAGAAATCAGATAACTCTTCAATCCATAGAATGTTCATGAACAATGATGACGACGACGATGACGATGACAACAATTTCAAAAAGAGATTAAACAAGTCTCAACCTCGGATGTTCATCCCTGATATAGTTCTAGCAAATGTAAAACGCAACTGTGGTGACAAAAAATTATGGAGCTCTAAGAAGGTGAACACTCGGTTATATGTGATGTATTCCACAGGCCCTGTTAAACTGGTTCAGCAAGTGCAGGAAGCAATAGCAGACAGGAACCATGGGGGTGGGAGTGGGGAGGTCATGCAGCCATTCAATTTGGAGTGACTGATGTGTAAAAGTGAGTGAAATGGAAGCATGTGATTGCTTTCTTTCGTTTACTTACACAAACGCATATCCTGAAGCAAAGCATGATTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01720	20077	28087	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006259 DNA metabolic process

GO:0006302 double-strand break repair

cellular_component
GO:0005634 nucleus

molecular_function

GO:0004519 endonuclease activity

GO:0004527 exonuclease activity

GO:0016787 hydrolase activity

GO:0030145 manganese ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001720s00031701.1	PF00149.23	Metallophos	10	254	1.80E-21
Glyur001720s00031701.1	PF04152.9	Mre11_DNA_bind	299	452	8.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.097
SRR1783600	control	7.239
SRR1783602	moderate drought stress	10.581
SRR1811619	moderate drought stress	10.464

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.137
DRR006520	Root Summer glycyrrhizin high producing strain	8.700
DRR006521	Root Winter glycyrrhizin high producing strain	5.399
DRR006522	Root Winter glycyrrhizin high producing strain	5.229
DRR006523	Root Summer glycyrrhizin low producing strain	9.621
DRR006524	Root Summer glycyrrhizin low producing strain	9.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.354
SRR2868004	Drought Stress (root)	12.257
SRR2967015	Control (root)	12.667

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.352
SRR9715740	Leaf	6.774
SRR9715741	Leaf	5.320
SRR9715739	Root	0.928
SRR9715742	Root	3.992
SRR9715743	Root	3.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.535
SRR8749028	MeJA induced 9h	16.681
SRR8749029	MeJA induced 9h	5.694
SRR8749030	Uninduced	3.375
SRR8749031	Uninduced	2.018
SRR8749032	Uninduced	1.566

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.603
SRR8400027	Control - Root	9.876