Gene detail

Gene detail information of Glyur001720s00031700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54270.1	4.00E-95	light-harvesting chlorophyll B-binding protein 3
NR	CAN83151.1	1.84E-137	hypothetical protein VITISV_031291 [Vitis vinifera]
Swissprot	tr\|P27489\|CB23_SOLLC	4.00E-117	Chlorophyll a-b binding protein 13, chloroplastic (Precursor)
trEMBL	tr\|A5BEB1\|A5BEB1_VITVI	7.00E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83151.1}

Sequence

Transcript Sequence

>Glyur001720s00031700.1
ATATGATGTTACACTTAGCCTCCCTCTCTACACATTTCTGGTAACCGTTCTTAATTACTATCATCTTCCATTTTTTGAGTAGACTAAGGTTTCAACTGAAGAAGCACCTCAAGGCTTGGGAAAATCATGGCAACAACAGCATTGATGGCAGCCACAGCANGCTCTGGCACTGTTATTAAGCCAANTCCTTTCCTTGGNCAAACCAAAGGTGCCAATGCCAACCCTCTTAGAGATGTTGTCTCCATGGGAACTGGGAAATTCACCATGGTGATCCATGGGCGTTGGGCTATGCTTGGAGCACTAGGATGCATAACCCCAGAAGTGCTTGAGAAGTGGGTGAGAGTGGACTTCAAAGAACCCGTTTGGTTCAAAGCTGGGGCCCAGATATTCTCAGAAGGTGGGCTTGACTATTTGGGGAACCCAAACCTTGTCCATGCACAAAGCATCCTAGCAGTGTTGGGCTTCCAAGTTGTTCTAATGGGCCTTGTTGAAGGGTTCCGCATCAATGGTCTTCCTGGGGTTGGAGAGGGTAACAACCTCTACCCTGGTGGACAGTACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTGAGCTCAAGGTAAAGGAGATCAAGAATGGAAGGTTGGCTATGTTCTCTATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGGAAAGGACCCTTGGAGAACCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCCGGTTCTTAAAACATACATGACTATGATGCTTTGCTTCCCTTTGTGTGATTAATGATGAGGCATGGCCCATTTATGTGTAGATTTATGATCATGATAATGTATGGATTAGTGTACTTTGTTAAGGACTAATTAAGGTCCATTTTAAATTAACATGGAAGATCCCTTGTTAATCTGTTTTGTTTAAACCAACCGATGAGAAATGGATAACAACAATNCTAAAGCAAGGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01720	17111	18862	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001720s00031700.1	PF00504.16	Chloroa_b-bind	48	182	2.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.993
DRR006520	Root Summer glycyrrhizin high producing strain	1.106
DRR006521	Root Winter glycyrrhizin high producing strain	0.111
DRR006522	Root Winter glycyrrhizin high producing strain	0.108
DRR006523	Root Summer glycyrrhizin low producing strain	0.366
DRR006524	Root Summer glycyrrhizin low producing strain	0.366
DRR006525	Leaf Summer glycyrrhizin high producing strain	906.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	901.592

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.928
SRR2868004	Drought Stress (root)	33.223
SRR2967015	Control (root)	10.941

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	794.024
SRR9715740	Leaf	586.525
SRR9715741	Leaf	634.639
SRR9715739	Root	0.115
SRR9715742	Root	1.513
SRR9715743	Root	0.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.402
SRR8749028	MeJA induced 9h	0.806
SRR8749029	MeJA induced 9h	0.513
SRR8749030	Uninduced	0.620
SRR8749031	Uninduced	0.271
SRR8749032	Uninduced	0.930

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.270
SRR8400027	Control - Root	0.431