Gene detail

Gene detail information of Glyur001718s00031995

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06060.1	1.00E-82	NAD(P)-binding Rossmann-fold superfamily protein
NR	NP_001237661.1	7.30E-135	uncharacterized protein LOC100306108 [Glycine max]
COG	YP_001864184.1	1.00E-58	tropinone reductase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P50165\|TRNH_DATST	6.00E-103	Tropinone reductase homolog
trEMBL	tr\|C6SY07\|C6SY07_SOYBN	3.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G40560.1}

Sequence

Transcript Sequence

>Glyur001718s00031995.1
ACACAAGTCCTCTACTACATCTGAGAACCACTAAATTAAGGAAACAAAATGAAATAAATAAAACTATTCTTTATTTTGCTTTTCCGTATCAAGGATCCCACTGATTATTAGCACATGGCTGCAGAAGCAAAGTTGAATTTCAAAGACAAAAGATGGTCACTCCATGGGATGACCGCTCTAGTGACGGGTGGAAACCGAGGCATAGGGCACGCAATTGTGGAAGAGTTAGCAGAGTTTGGGGCAGCTGTGCATATATGTTCACGTAATCAACAAGATATTGATAAATGTTTGGAAGAGTGGAAAAACAAAGGATTTCATGTGACCGGGTCAGTGTGTGATGTATCATCTCGTGACCAACGTGAGAAGTTAATGGAAACCGTTGCTTCAGTCTTTCATGGAAAACTCAACATTCTAATAAACAATGCTGCGGTATCTACACCTAAGACCATCACAGATTTTACTGCTGAAGATATGACAACCATAATGGGTACCAATTTTGAGTCCGGTTACCACCTGTGTCAGCTTGCACACCCACTTCTGAAAGCATCCGGATATGGAAGCATAGTGTTCATATCTTCTATTGCAGGAGCCATGAATCAATTCACCAAGAACATAGCATTGGAATGGGGAAAGGATAATATCCGTGCAAATGCTGTGGCGCCTGGACCTGTTAAGACCGCCCTTTTGGATTCCATCAGTAAATCTATAGATTTGGATTATAACTTCGTGGATGCTTTAGTGTCTCAAACACCTGTTGGTCGCATTGGAGAAACTAAGGACATATCAGCACTGGTTGCTTTTCTTTGCCTTCCAGCTGCTTCATACATCAATGGACAGATTATAGTTGCAGATGGGGGATCCCACTGAATAGCAATATGGATGCAGAAGCAAAGTTGAGCTTCAAAGACAAAAGATGGTCACTCCATGGAATGACAGCTCTAGTCACCGGTGGAAGCCGAGGCATTGGGCACGCAATTGTGGAAGAGTTAGCGGAATTTGGGGCAGCTGTGCATATATGTGCACGTAATCAAGATGATATTGATAAATGTTTGGAAGAGTGGAAAAACAAAGGATTCCGTGTGACAGGGTCGCCGTGTGATTTACTATCCCGTGACCAACGTGAGAAGTTAATGGAGACTGTTGCTTCAGTCTTTCACGGAAAACTCAACATTCTAGTAAATAATGCTGCGACCTGTACACCTAAGACCATCATAAATTATACTGCTGAAGATATAAAAACTACAATGGGTACCAATTTTGAGTCTGGTTACCACTTGTGCCAACTTGCACACCCACTTCTNAAAGCATCAGGATATGGGAGCATAGTTTTCATATCCTCTATTGCAGGTTTGAAAGCTTTGCCTATATGTTCTATCTATGCAGCCTCTAAAGGAGCCATGAATCAATTCACCAAGAACGTAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGTCGTGGCACCTGGACCTGTTATGACNGCCCTTTTGGAATCCNTCATTAAACATACTGAAGCAGATAAGGCCCTGGATGACGTAGTTTCTCAAGCACCGGTTAGCCGTATGGGAGAACCTAAAGAGATATCATCATTGGTTGCCTTTCTTTGCCTTCCGGCTGCCTCATACATCACTGGACAAATTATAGCTGCGGATGGGGGTTTCACTAATTAAGTCTTTTTTTCAGACTTTTAAACTTTTGATATATATATATATTAGTTAAAGAGCATAAAGAATCTCTATATCAATTTGGTTTGCCAGAAGCTCCAAAACTGATTAATTATTGGCAATTGTTCCAAGCATCAAACTCCAAGTGTTGCGATTTCTTTAGAATAACTTTCGTTACATTATTTTAATCTATTGCCATTATTAAAAACATGTTTGTTATCTTTCAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01718	22712	39698	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08081	TR1	EC:1.1.1.206	Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001718s00031995.1	PF00106.20	adh_short	20	161	3.50E-29
Glyur001718s00031995.2	PF00106.20	adh_short	20	130	2.30E-20
Glyur001718s00031995.2	PF13561.1	adh_short_C2	135	227	2.70E-13
Glyur001718s00031995.3	PF00106.20	adh_short	21	131	1.40E-20
Glyur001718s00031995.3	PF13561.1	adh_short_C2	136	228	2.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.073
SRR1783600	control	0.068
SRR1783602	moderate drought stress	0.101
SRR1811619	moderate drought stress	0.098

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.247
DRR006520	Root Summer glycyrrhizin high producing strain	0.316
DRR006521	Root Winter glycyrrhizin high producing strain	1.277
DRR006522	Root Winter glycyrrhizin high producing strain	1.072
DRR006523	Root Summer glycyrrhizin low producing strain	0.186
DRR006524	Root Summer glycyrrhizin low producing strain	0.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	85.287

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.376
SRR2868004	Drought Stress (root)	0.174
SRR2967015	Control (root)	0.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	171.678
SRR9715740	Leaf	172.490
SRR9715741	Leaf	159.764
SRR9715739	Root	0.039
SRR9715742	Root	0.173
SRR9715743	Root	0.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.011
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.109
SRR8400027	Control - Root	0.167