Gene detail information of Glyur001718s00031992 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31280.3 | 6.00E-24 | conserved peptide upstream open reading frame 7 |
| NR | KHN40269.1 | 0 | Putative basic helix-loop-helix protein [Glycine soja] |
| Swissprot | tr|Q58G01|LHWL3_ARATH | 9.00E-25 | Transcription factor bHLH155 |
| trEMBL | tr|K7L1I9|K7L1I9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G16411.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01718 | 224 | 6729 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001718s00031992.1 | PF14215.1 | bHLH-MYC_N | 8 | 176 | 3.60E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.274 |
| SRR1783600 | control | 16.600 |
| SRR1783602 | moderate drought stress | 26.164 |
| SRR1811619 | moderate drought stress | 25.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.503 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.334 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.583 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.574 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.256 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 65.168 |
| SRR2868004 | Drought Stress (root) | 86.042 |
| SRR2967015 | Control (root) | 88.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.551 |
| SRR9715740 | Leaf | 21.173 |
| SRR9715741 | Leaf | 25.951 |
| SRR9715739 | Root | 3.645 |
| SRR9715742 | Root | 24.348 |
| SRR9715743 | Root | 21.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.310 |
| SRR8749028 | MeJA induced 9h | 42.866 |
| SRR8749029 | MeJA induced 9h | 20.241 |
| SRR8749030 | Uninduced | 20.216 |
| SRR8749031 | Uninduced | 7.932 |
| SRR8749032 | Uninduced | 9.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.520 |
| SRR8400027 | Control - Root | 61.599 |