Gene detail

Gene detail information of Glyur001716s00035282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77470.1	5.00E-168	replication factor C subunit 3
NR	KHN21714.1	0	Replication factor C subunit 5 [Glycine soja]
COG	YP_687582.1	2.00E-84	replication factor C small subunit [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q9CAQ8\|RFC5_ARATH	0	Replication factor C subunit 5
trEMBL	tr\|I1KAA7\|I1KAA7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11980.1}

Sequence

Transcript Sequence

>Glyur001716s00035282.1
CACCTCCATTGTGAGTTTTGTGAGTGNATATTTTTCAGTTCTCAAAAAACACTTCACACAGTGACTACCGAGACAACAAAGCATAAAGAAAGAGCTTTACCATTGTGACCTAACCATGGCTGAGTCGACCCATCCCATGGAAATCGACGGCGACGACCTCACTCCCTCCGCCAGGCACGATAAGGGCAAGTCCGTCGTCGTCGTCGCCGCCGGCAACCCTCCATTCGCCGGCAAGGCGATTCCGTGGGTCGAAAAGTACCGCCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATTGTCGAGACCGTTGATAGGCTGACCACCGAGAACAGATTACCCCATCTCCTGTTGTATGGCCCTCCTGGCACGGGCAAAACTTCAACTATTCTCGCTGTGGCGCGCAAACTGTATGGTGCACAATACCACAATATGATTTTGGAGCTCAATGCTTCAGATGATAGAGGAATTGACGTTGTGCGGCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTGTCATTTGGCGTTAAGTCCTCTGTAAAACTGGTCTTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGAGCTTGATGTTCAAGACAGTGGCTTAGCAGCTCTTGTTAGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCCTCTCAGCAGATAACGGAAGATGCTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTACAGATAGCTTTAAAAGAATACATGAAATCAAGACGAGGAAAGGATTGGCCGTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATNAAGATGCCTCCCGCTGTTCGCGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAACTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCAGTTATTGCTTCTTTTACACGTGCTAGATCCGCACTGGTTGCTGCTGCTACATAACCTTCTTCCGAATCCGATCCACTGGGTGTTGCATTCACATACTATTCAGCTTGGCTTGTTTGATTTCCCTGGCAACTGTTGTCAATGTTGAGAATGAGATTGGTAGGTTCTTAATTTGTATAAAGAAAGTAACCTTTTTTGTAACTTAAGATGTGTTTTCACTTTCAAGTAATTTCACAAAATTTTCAAGTAGTACATCCTTAGTTTTAAATTTTACTACCTACTATACGTGTTNTCTGGTATCTATGACACCATTGGGTTCAAACGATACATCAGTACAATGAAAGGCCTTTAGATAACAATGGCTTAAGTTTTGCTTTGAAATTTGGGGTGGGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01716	34383	42564	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001716s00035282.1	PF00004.24	AAA	78	199	4.80E-16
Glyur001716s00035282.1	PF08542.6	Rep_fac_C	265	353	8.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.209
SRR1783600	control	14.611
SRR1783602	moderate drought stress	12.976
SRR1811619	moderate drought stress	13.110

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.639
DRR006520	Root Summer glycyrrhizin high producing strain	12.038
DRR006521	Root Winter glycyrrhizin high producing strain	4.915
DRR006522	Root Winter glycyrrhizin high producing strain	4.656
DRR006523	Root Summer glycyrrhizin low producing strain	8.953
DRR006524	Root Summer glycyrrhizin low producing strain	9.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.915
SRR2868004	Drought Stress (root)	10.895
SRR2967015	Control (root)	12.588

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.051
SRR9715740	Leaf	6.012
SRR9715741	Leaf	6.594
SRR9715739	Root	4.478
SRR9715742	Root	9.065
SRR9715743	Root	7.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.006
SRR8749028	MeJA induced 9h	22.033
SRR8749029	MeJA induced 9h	29.600
SRR8749030	Uninduced	3.764
SRR8749031	Uninduced	2.445
SRR8749032	Uninduced	3.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.137
SRR8400027	Control - Root	16.922