Gene detail

Gene detail information of Glyur001713s00037728

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20220.2	6.00E-85	zinc knuckle (CCHC-type) family protein
NR	KEH19794.1	1.23E-169	zinc knuckle (CCHC-type) family protein [Medicago truncatula]
trEMBL	tr\|A0A072TQL6\|A0A072TQL6_MEDTR	5.00E-170	Zinc knuckle (CCHC-type) family protein {ECO:0000313\|EMBL:KEH19794.1}

Sequence

Transcript Sequence

>Glyur001713s00037728.1
CCGGTAACCATTTCCCATCACCATCATCTTAAGGCTTCAGCTTGAAAACACACACAACACAACACAACACAACACAACACACAGTTCGAATAATCATGAAATCCTACCGAGTTCACATGTTCCACACTCCGCTTCGCGTTCTGACATTATCTCCATGCACCACAAAGCCACCACTAAACATGCTTCTCTTGCTTTCCCTTCGTCCCAACACAAACACCTCCTTCTTCCTTTGCTCATCACTCAACGACGACTCCTTTCCCATTCCAAAACCAACCCAGTTGGGTTACAGTAGTCCTTCAGAGGAACTGTTCGGGCTGGANGTGGAACTCAAGCCAAGCAAAGCTAACTCTCGTCGGAAACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGCAGAGGAAGGGGTTATACTCCTTGTACTGAATGCGGAATAGAAAGATCAAGATCAGACTGTCCAAAATGTAGTGGAAAGGGTATACTGACGTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAAGAATCAATTGATGAACAACCATGGGAGAGAGCCCGTTCTATATCCCCACTCAAAGTGAAGGAAGATGACGAAGTTGACAAATTAGACATAAAGCTAGACGTGAAGAAAAAATCCAAGCGCATTTACCAGTCACCATCTCCTGAAGTTGGATTAAAGATCAGTCGTACATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACCGAATGAAGATCATGCACCAGGATCCCATGCTTCAGGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTACTGCAGCAAGAAATCATGCTTCCAAAACTATGAAAGTTTTCTTTAGTNATCCAATAAACCGTCAGAAAAGGAGCATATCCATGAAAGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATGAAGAAGGGACATGGCCTCTAGAAGAGCATACAAGTGTCGTTTGTGCCAGGAAGTGGGACACAATACTAGGACATGTCCTAGTAGANTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01713	22604	27868	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

GO:0031072 heat shock protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.184
SRR1783600	control	2.215
SRR1783602	moderate drought stress	1.514
SRR1811619	moderate drought stress	1.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.239
DRR006520	Root Summer glycyrrhizin high producing strain	2.120
DRR006521	Root Winter glycyrrhizin high producing strain	0.614
DRR006522	Root Winter glycyrrhizin high producing strain	0.469
DRR006523	Root Summer glycyrrhizin low producing strain	3.446
DRR006524	Root Summer glycyrrhizin low producing strain	3.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.557

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.358
SRR2868004	Drought Stress (root)	7.527
SRR2967015	Control (root)	4.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.382
SRR9715740	Leaf	30.973
SRR9715741	Leaf	29.223
SRR9715739	Root	0.673
SRR9715742	Root	4.016
SRR9715743	Root	3.997

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.837
SRR8749028	MeJA induced 9h	2.928
SRR8749029	MeJA induced 9h	2.592
SRR8749030	Uninduced	1.542
SRR8749031	Uninduced	0.176
SRR8749032	Uninduced	1.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.074
SRR8400027	Control - Root	9.765