Gene detail

Gene detail information of Glyur001712s00031457

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51340.2	2.00E-148	MATE efflux family protein
NR	XP_004516070.1	0	PREDICTED: MATE efflux family protein 1-like isoform X1 [Cicer arietinum]
COG	YP_003706607.1	4.00E-36	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q9SYD6\|MATE1_ARATH	0	MATE efflux family protein 1
trEMBL	tr\|I1LAB4\|I1LAB4_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur001712s00031457.1
ATGTATTTAACTATTGAACATTGTGTTGGGAATAAAGATATTGAATTCACAAAAGTTGAAGGGCCCATATTATTTAATGCTTCCAGGAATGCTCTTAGAAAGGATGAACTAGGCGTGGAAATAATGCAGATTTCAGTCCCTACCATTCTGGCTTTAACAGCAGACCCTATTGCTTCTCTGATTGATACTGCATTCATCGGCCACATAGGTCCTGTGGAGCTTGCTGCTGCGGGAGTTTCAATTGCTATTTTCAATCAAGTCTCAAAAATTGCAATTATTCCGCTAGTCAGTGTTACAACCTCTTTGGTTGCTGAGGAAGATGCTGCCGATAAGTTACAAGCTCAATCATCAGAAAATGAAATGCTGATGAAGGTCTCTTGTGACTCTAATGCTAATGAGGAAATAAAGTTGGAAGTGAAAGAACATACAGAGCAAGCTGATCCTGAATGCAGCACATCATCAACAAATATGGACAGCGTAGCTAAATTTGGCCATGAAAAAAGCTATATTCCATCAGCATCATCGGCAATAGTTATTGGCGGTTTGCTTGGGGTCCTACAAGCTTTCTTTCTAATTTTTACAGCTAAAAAAATCTTGAATTACATGGGGGTTCATTCTGATTCTCCCATGTTAAAACCAGCACAGCAATACTTGACATTGAGGTCATTTGGTGCGCCAGCTGTTATTCTTTCTATGGCAATGCAAGGAGTTTTTAGGGGAATCAAAGATACAAGAACTCCTTTATATGCTACAATTATGGGAGATGTAACAAATATCATTTTAGATCCATTACTTATGTTCATACTCCATTTGGGAATCAGTGGGGCAGCCATTGCCCATATTATCTCACAGTACTTNATTTCCTTAATACTATTGTGGAGTTTAATGAAACAAGTTGTTCTCATGCCTCCAAGTTTTCAAGACTTCAAATTTGCGAAGATTCTGAAAAATGGGTTTCTGTTATTTCTTAAAGTTGCAGCAGCGACATTCTGTGTGACCTTATCAGCATCCCTAGCAGCAAGGCAAGGATCAACAACAATGGCTGCATTTCAAATCTGCTTACAGATTTGGATGGCAACCTCCTTGATTGCTGATGGATTGGCTGTTGCTGGACAAGCCATTATTGCAAGTGCATTTGCAAGAAGGGACTACGACATGGTCATCGAATCTGCTTCACGTGTGCTGCAGCTTGGCTTGATTCTGGGGCTGGTGCTTTTGTTCCTTCTTTTTAGTTTACTTCCATTTGCTTCTAGATTATTTACAAATGACACCAATGTTCTGCAACTTGTCAGCATTGGTATTCCATATGTTGCAGCCACTCAACCCATCAATGCTCTGGCATTTGTTTTTGATGGAATCAACTATGGAGTTTCAGATTTCATATACTCTGCTTACTCAATGATTATGGTAGCATTGGTGAGCATATTCAGCTTGTATATGTTATCCTCAAGCCTTGGCTTTACTGGCATCTGGATTGCCTTGTCTATTTACATGAGTCTAAGGATATTTGCAGGCTTTTGGAGGATTGGTACTGGATCAGGACCATGGAGCTTCCTTAAGGAAAACTATGCATAACTCTAATAGTTCCATACTATTACAAAACTAATGTGAATTTTGGTAGTCAGAGTCTCGTGCTCAGCACAATTTATCCACATTGATGATGAGAATACTCCCATCAAGAACAGTGGCAGTTATCACTCCTTTTTGTAGGCAGAGGTTGCACTTTCCAAAGGGTGTAGTTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01712	14694	19932	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001712s00031457.1	PF01554.13	MatE	172	264	5.30E-14
Glyur001712s00031457.1	PF01554.13	MatE	326	477	1.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.390
SRR1783600	control	1.357
SRR1783602	moderate drought stress	1.482
SRR1811619	moderate drought stress	1.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.721
DRR006520	Root Summer glycyrrhizin high producing strain	0.700
DRR006521	Root Winter glycyrrhizin high producing strain	0.151
DRR006522	Root Winter glycyrrhizin high producing strain	0.137
DRR006523	Root Summer glycyrrhizin low producing strain	2.170
DRR006524	Root Summer glycyrrhizin low producing strain	2.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.331
SRR2868004	Drought Stress (root)	25.202
SRR2967015	Control (root)	19.324

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.513
SRR9715740	Leaf	1.608
SRR9715741	Leaf	2.572
SRR9715739	Root	0.355
SRR9715742	Root	0.485
SRR9715743	Root	0.199

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.234
SRR8749028	MeJA induced 9h	43.835
SRR8749029	MeJA induced 9h	34.436
SRR8749030	Uninduced	20.609
SRR8749031	Uninduced	21.695
SRR8749032	Uninduced	18.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.417
SRR8400027	Control - Root	4.745