Gene detail information of Glyur001709s00034625 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13920.1 | 6.00E-09 | GRF zinc finger / Zinc knuckle protein |
| NR | XP_006604209.1 | 2.66E-124 | PREDICTED: uncharacterized protein LOC100802558 [Glycine max] |
| trEMBL | tr|I1N831|I1N831_SOYBN | 1.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G27980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01709 | 20188 | 26537 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001709s00034625.1 | PF06839.7 | zf-GRF | 86 | 123 | 6.30E-06 |
| Glyur001709s00034625.2 | PF06839.7 | zf-GRF | 86 | 123 | 6.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 81.683 |
| SRR1783600 | control | 81.533 |
| SRR1783602 | moderate drought stress | 24.841 |
| SRR1811619 | moderate drought stress | 24.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.345 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.452 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.359 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.083 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.888 |
| SRR2868004 | Drought Stress (root) | 10.051 |
| SRR2967015 | Control (root) | 9.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.416 |
| SRR9715740 | Leaf | 2.894 |
| SRR9715741 | Leaf | 2.897 |
| SRR9715739 | Root | 11.709 |
| SRR9715742 | Root | 42.114 |
| SRR9715743 | Root | 36.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.371 |
| SRR8749028 | MeJA induced 9h | 6.990 |
| SRR8749029 | MeJA induced 9h | 5.349 |
| SRR8749030 | Uninduced | 0.674 |
| SRR8749031 | Uninduced | 0.119 |
| SRR8749032 | Uninduced | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.514 |
| SRR8400027 | Control - Root | 39.972 |