Gene detail information of Glyur001708s00041151 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08870.1 | 1.00E-55 | Arginase/deacetylase superfamily protein |
| NR | AFK35583.1 | 3.21E-70 | unknown [Lotus japonicus] |
| COG | YP_861050.1 | 3.00E-31 | arginase [Gramella forsetii KT0803] |
| Swissprot | tr|Q9ZPF5|ARGI2_ARATH | 3.00E-67 | Arginase 2, mitochondrial (Precursor) |
| trEMBL | tr|I3S5P1|I3S5P1_LOTJA | 1.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK35583.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01708 | 39165 | 43597 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01476 | E3.5.3.1, rocF, arg | EC:3.5.3.1 | Biosynthesis of amino acids | map01230 |
| Arginine biosynthesis | map00220 | |||
| Arginine and proline metabolism | map00330 | |||
| Amoebiasis | map05146 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001708s00041151.1 | PF00491.16 | Arginase | 66 | 182 | 1.90E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.092 |
| SRR1783600 | control | 35.833 |
| SRR1783602 | moderate drought stress | 0.149 |
| SRR1811619 | moderate drought stress | 0.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.613 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.687 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.131 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.127 |
| SRR9715740 | Leaf | 5.226 |
| SRR9715741 | Leaf | 5.756 |
| SRR9715739 | Root | 0.408 |
| SRR9715742 | Root | 0.212 |
| SRR9715743 | Root | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.038 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.121 |
| SRR8400027 | Control - Root | 0.161 |