Gene detail

Gene detail information of Glyur001704s00039871

Functional Annotation

Database	Orthologs	E value	Annotation
NR	AES97952.2	0	glycoside hydrolase family 5 protein [Medicago truncatula]
COG	YP_004515180.1	3.00E-27	glucan 1,3-beta-glucosidase [Methylomonas methanica MC09]
trEMBL	tr\|G7KA50\|G7KA50_MEDTR	0	Glycoside hydrolase family 5 protein {ECO:0000313\|EMBL:AES97952.2}

Sequence

Transcript Sequence

>Glyur001704s00039871.1
TATCTATCTATCTAATCTAATGATGACCAGCCTCAAAATATCGCCACTCGNCTTGATTATTATCTTGTTTGTTAAGCTTTCTATCACCCATGGGAGACCAAATCCGGAGCTTCGAGTGAGAGCAGTGAATCTGGGTGGTTGGTTGGTTACTGAAGGTTGGATGAAACCTTCCCTCTTCGATGGCATTCCAAATAAGGACTTCTTGTTGTGGAGAATAAAGGAGGACAGTTTCAGATTCAGGGTGTTTAACAAACAGTTTGTGGGGTTAGATGGGATTAACGTGGTGGCTGTGTCCAATACTTNCACTGATTCTCATGAGACGTTTCGTATTGTCAAGGAAAGTGAGAATTCCACTCGTGTTAGAATCAAAGCATACAATGGACACTTCCTGCAGGCGAAGACAGAGGAAATGGTNACCGCTGATGTTTCAAAGGTTGGAGGATGGAGAGATGATGACCCAACCGTTTTTGTAATNACAATTGCTGCAAGATTGCAAGGTGAATTCCAAGTTACAAATGGTTATGGGCCCATCGAAGCTCCGCAAGTTATGAAGGCCAATAATGGACTAAATGCTGTTAGAATACCAGTGGGATGGTGGATAGCAAGTGACCCAACTCCACCGTGGCCTTATGTTGGGGGTTCCTTGCACGCACTAGACAATGCCTTCTTGTGGGCACAGAAATATGGATTAAAAATCATCATTGATCTTCATGCTGCCCCCGATTCTCAAAATGGTTTTCAGCACAGCTCTTCAAGAGATGGTTCTCAAGAATGGGGAAAATCAGATGAAACATCCAACAAACAGTTCATGTATGCAAAAAGCCCGAGCCTATATGCAGTTGAGCTCTTAAACGAGCCTCTCTCACCTGGTGTGACACTAGAGAGATTGAACAAGTACTACAAGGCCGGTTATGAAGCTGTGCGCAAACACTCTTCCACTGCTTACGTGGTTTTATCAAATAGGCTAGGACCCTCTGAGCCCAAGGAACTGTTTCCTCTTGCTACTGGCCTTATGCGTTCTGTGATTGATGTCCACTACTACAACATCTTTGATGATTTGTTTGAAAACATGACTGCCCAACAGAACATTGATTTCATTTACACTAACCGCTCATCGGAGTTGAATTTTATCACAACCTCAAATGGCCCTCTTACTTTTGTCGGTGAATGGGTTGCTGATTGGCGCGTTCAAGGGGCTACAAAAGAGGACTTCCAAAGATTNGGCAAGGCCCAAACAGATGTTTTTGGGCGAGCTTCATTTGGTTGGGCTTATTGGGCTTTCAAGAATGCCAACANCCATTGGAGTCTGGAGTGGATGACAAAAAATGGTTACATCAAGCTTTAGAAAATTGACCAAAAAAAAAAGCTTTAGAAAGTATTGACCCAAAAAAAAAACTTTAGAAAGTTGTTTCGACCAAAAAAAGATTAGAAAGTTGTCTTTGACCCAAAAAAAAAACCTTTAGAAAGTTGTCGTTATAGACTACAAAATATAATGCTAGCTTTCTCCTGGGGACCTGTGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01704	50184	55204	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0007015 actin filament organization

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0051015 actin filament binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001704s00039871.1	PF00150.13	Cellulase	177	424	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.050
SRR1811619	moderate drought stress	0.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.715
DRR006520	Root Summer glycyrrhizin high producing strain	5.370
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.018
DRR006523	Root Summer glycyrrhizin low producing strain	4.047
DRR006524	Root Summer glycyrrhizin low producing strain	3.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.236
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.240

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.644
SRR2868004	Drought Stress (root)	2.121
SRR2967015	Control (root)	1.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.675
SRR9715740	Leaf	1.623
SRR9715741	Leaf	3.885
SRR9715739	Root	0.115
SRR9715742	Root	0.902
SRR9715743	Root	0.519

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.568
SRR8749028	MeJA induced 9h	1.418
SRR8749029	MeJA induced 9h	1.161
SRR8749030	Uninduced	3.955
SRR8749031	Uninduced	3.173
SRR8749032	Uninduced	6.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.216
SRR8400027	Control - Root	0.542