Gene detail

Gene detail information of Glyur001702s00035239

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36690.1	4.00E-134	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003535233.1	0	PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase-like [Glycine max]
COG	YP_004572412.1	6.00E-35	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|D4N500\|DIOX1_PAPSO	9.00E-66	Thebaine 6-O-demethylase
trEMBL	tr\|I1L942\|I1L942_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G07220.1}

Sequence

Transcript Sequence

>Glyur001702s00035239.1
AGCTTCAATTGGCTTTTCATTTTCCATATACAAGATCATTTATCATTCCTAGATAGGATATATATATAAATACTCTGTATCAATCACAGAACACAACATGTCTCCTGGAGTGGCAGTGAGTGAAGGGAAGGGTGGTGNTGATGATGATTATACATCAGGAAATCAATTGTATCAGAAAGGTGTGAAGCAGCTAGTTGAGAATGGCCTTCACACTGTACCTAAAAAGTACATACTTCCTCCTTCCGATCGTCCTGCTATGAATACAGAAGATCCAAATGTTTCCAAGCAAAACCTTCAGCTACCNATCATTGATTTTTCTGAATTGGTTGGTCCAAATAGGCCCCAAGTCCTTCAAGCTCTATCCAATGCTTGTGAACGGTACGGATTTTTTCAGCTGGTAAACCATGGGATCTCAGATGATGTTATCAGCAGCATGAGGGATGTGAGTGGGAGATTTTTCGATCTTCCTTTTGAGGAAAGAGCCAAGTACATGACAGATGANATGCGAGCAGCTGTTCGATGTGGGACTAGCTTCAGCCAAACCAAAGACACGGTGTTCTGTTGGAGGGACTTCTTGAAACTCCTCTGTCATCCCTTGCCTGATTTTCTTCCCCATTGGCCTGATTCNCCCGTGGACTTTAGGAAAGTGGCGGCTACCTACGCGGAAGAAACCAAACACTTATTTCTAAGGTTAATGGAAGCCACCCTAGAGAGCTTAGGTATCATGGAAGCCAACCAAGAAGGAAAGGACAATCATATTCTCAAAGAAATGGAAGATGATGGGAGCCAGCTTATGGTGGCCAATTTCTACCCACCATGTCCTCAACCAGACCTAACCCTAGGGATGCCCCCTCACTCTGATTACGGATTCCTCACCCTCCTCCTCCAAGATGAGGTTGAGGGTTTGCAGATCCAATTTCAAGGGAATTGGTTCACTGTTCAACCTATCAACAATGCCTTTGTNGTCAATGTTGGTGATCACCTTGAGATATTTAGCAACGGGAAATACAAGAGCGTGCTACACAGGGTGGTGGTGAATTCGTCCAAGAGTAGGACATCGGTGGCTTCGTTGCATAGCGTTTCCTTAAACAGCACAGTGAGACCGTCACCCAAACTCATTGACGAANCGAATCCCAAACGTTACGCCGACACCGATTTTGAAACTTTTCTTTCCTACGTTTCCACCAGGGAGNCCAAGAGAAAGGATTTCCTAGAATCTAGGAAATTGACCTCTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01702	49863	54539	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001702s00035239.1	PF14226.1	DIOX_N	68	167	1.40E-23
Glyur001702s00035239.1	PF03171.15	2OG-FeII_Oxy	231	325	4.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.799
SRR1783600	control	11.867
SRR1783602	moderate drought stress	20.053
SRR1811619	moderate drought stress	20.376

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.227
DRR006520	Root Summer glycyrrhizin high producing strain	4.506
DRR006521	Root Winter glycyrrhizin high producing strain	0.054
DRR006522	Root Winter glycyrrhizin high producing strain	0.034
DRR006523	Root Summer glycyrrhizin low producing strain	4.644
DRR006524	Root Summer glycyrrhizin low producing strain	4.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.424

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.583
SRR2868004	Drought Stress (root)	18.202
SRR2967015	Control (root)	16.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.426
SRR9715740	Leaf	0.286
SRR9715741	Leaf	1.336
SRR9715739	Root	3.857
SRR9715742	Root	2.636
SRR9715743	Root	2.707

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.432
SRR8749028	MeJA induced 9h	3.429
SRR8749029	MeJA induced 9h	2.564
SRR8749030	Uninduced	1.690
SRR8749031	Uninduced	0.102
SRR8749032	Uninduced	0.291

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.531
SRR8400027	Control - Root	6.886