Gene detail

Gene detail information of Glyur001702s00035237

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03555.1	3.00E-179	permease, cytosine/purines, uracil, thiamine, allantoin family protein
NR	XP_004513980.1	0	PREDICTED: probable allantoin permease-like [Cicer arietinum]
COG	YP_008153945.1	6.00E-154	nitrate reductase [Sorangium cellulosum So0157-2]
trEMBL	tr\|G7IA71\|G7IA71_MEDTR	0	Cytosine/purine uracil thiamine allantoin permease {ECO:0000313\|EMBL:AES60688.1}

Sequence

Transcript Sequence

>Glyur001702s00035237.1
ATGAAATGTTCCAATTCCAAGGAGAACTTTGAGCCTGATCCNACACTTACCAATGAAGATCTCAAGCCAACTGAACCAAGCCAAAGGACATTTTCTGGGTTGGAAATAGCTAGCCTATGGATTGGACTTGTTGTTGGTGTCCCTTCTTATTACCTTGCTGGTAGCTTGGTTGATCTTGGAATGGCTTGGTGGCAAGGGATTGCAACTGTGGTTATAGCNAACATGATCCTTTTAGTACCTTTGGTTCTCACTGGTCATCCAGGTACACATTATGGCATACCCTTNCCAGTTCTTGCAAGATCCTCTTTTGGAATCTATGGTGCTCATATTCCAACCCTTCTAAGGGCCTTGGTTGGTTGTGGTTGGTATGGTATTGAATCTTGGATAGGTGGGGAGGCAATTTTCCTTCTCTTGCCAAAATCAGTAANGGAAATTGCTTCATTGTCAAATTCTCTACCTTGGCTTGGCACTTCCCCACTTGAATTTTCTTGCTTCATGGTCTTTTGGGTGGCTCAATTGGCAATTGTGTGGAGAGGGATTGATGGGATTAGACAGCTTGAGAAGTACTCAGCTCCAATACTCATTGCCCTNACTTCAAGCCTCCTCATTTGGTCTTATCTCAAAGCTGGTGGCTTTGGTCACATGCTCTCTTTATCTTCTAGGCTCAACACTTCTGAGTTTTTGTCTGTGTTTTTCCCTTCTCTTACTGCCAATATAGCCTTTTGGGCTACTGTGGCTCTTAACATCCCTGATTTTACCAGATATGCTAAGAGCCAGAATGACCAAATAATTGGTCAAGTTGGGCTTCCAATCTTCATGGGGGCATTCACATTTGTTGGCCTAGCTGTCACCTCATCAACAAAAGTGATATTTGGTCATGTTATTTCAAACCCAATTCAGCTTCTTGGTCAAATTGGTGGAATCACAACTACTATCCTTGCAATCCTTGGTATAAGCCTTGCCACTATTACCACCAATATTGCTGCTAATGTTGTAGCACCTGCAAATGCTCTTGTTAATCTCAGCCCTTCATGGTTCACCTTTAGGAGAGGAGCTCTTCTAACTGCACTGCTTGGGATTGCATTCCAACCTTGGAGGCTTCTCAAGTCAAGTGAGAGCTTTGTTTATACTTGGCTNGTTGGATATTCTGCATTNATGGGTCCCATTGGAGGGATTNTTCTAGCAGATTACTATCTTATACAGAAAACGAACTTGAGTGTTAGTGATTTATACTCAAGGAGTCCTTATGGGGCATATCATTATTCAAGGGGGTTTAATGTAGCAGCAATTGTGGCCTTAGTTGTTGGGATTTTACCTGTAGTTCCTGGCTTCTTGCAGAAAGTTGGAATTGCAACTTCAATTCCACACACTTTTGTTGTGATCTACAACAATGCTTGGTTTATTAGTTTCTTTTCTGCAGGATTCTTGTATTGGGTTCTATCAAGTTTGAGAAGGAAACCAGNTAAATCTGCTGCTACAGACCCCTTTTTGCCAGCTGCAATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01702	37113	38618	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015851 nucleobase transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015205 nucleobase transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001702s00035237.1	PF02133.10	Transp_cyt_pur	24	468	6.20E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.008
SRR1783600	control	0.902
SRR1783602	moderate drought stress	1.759
SRR1811619	moderate drought stress	1.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.900
DRR006520	Root Summer glycyrrhizin high producing strain	1.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.072
DRR006523	Root Summer glycyrrhizin low producing strain	0.953
DRR006524	Root Summer glycyrrhizin low producing strain	0.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.731

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.682
SRR2868004	Drought Stress (root)	7.333
SRR2967015	Control (root)	4.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.266
SRR9715740	Leaf	14.570
SRR9715741	Leaf	12.572
SRR9715739	Root	1.557
SRR9715742	Root	1.675
SRR9715743	Root	1.803

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.141
SRR8749028	MeJA induced 9h	0.112
SRR8749029	MeJA induced 9h	0.081
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.676
SRR8400027	Control - Root	2.689