Gene detail information of Glyur001702s00035232 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60170.1 | 1.00E-07 | pre-mRNA processing ribonucleoprotein binding region-containing protein |
| NR | AFK40189.1 | 5.33E-25 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SIU7|I3SIU7_LOTJA | 2.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK40189.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01702 | 621 | 1247 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.867 |
| SRR1783600 | control | 5.371 |
| SRR1783602 | moderate drought stress | 6.872 |
| SRR1811619 | moderate drought stress | 5.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.973 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.830 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.353 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.791 |
| SRR2868004 | Drought Stress (root) | 7.922 |
| SRR2967015 | Control (root) | 8.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.991 |
| SRR9715740 | Leaf | 10.092 |
| SRR9715741 | Leaf | 8.311 |
| SRR9715739 | Root | 4.134 |
| SRR9715742 | Root | 8.114 |
| SRR9715743 | Root | 5.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.892 |
| SRR8749028 | MeJA induced 9h | 7.695 |
| SRR8749029 | MeJA induced 9h | 14.266 |
| SRR8749030 | Uninduced | 12.793 |
| SRR8749031 | Uninduced | 10.426 |
| SRR8749032 | Uninduced | 9.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.366 |
| SRR8400027 | Control - Root | 6.654 |