Gene detail

Gene detail information of Glyur001701s00038223

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G40780.2	lysine histidine transporter 1
NR	XP_003555159.1	PREDICTED: lysine histidine transporter 1-like [Glycine max]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	Lysine histidine transporter 1
trEMBL	tr\|I1N7L1\|I1N7L1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G24520.1}

Sequence

Transcript Sequence

>Glyur001701s00038223.1
NATATATATATACACACACTACCAAGGCGAAACTCCACCCTAAACAGAGACACTTTCGTGTTTTTCAAAGCGTAGAACAGAGAAACAGAATCCTCTGTGCTAGCAGCTGCAACATCTTTTCTTCACTGCTTCTCAAGTTGTTATGGGAACTCAGGCACAAACAGATATTGATGAAAATCTACAGAGGCAGAAGGCAATTGATGATTGGCTTCCAATTACTTCCTCAAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTTCTCAGTCTCCCCTATGCCATGGGTCCTGGGGTAACAGTACTAGTGCTCTCATGGATCATCACCCTATACACCCTATGGCAAATGGTTGAGATGCATGAAATGATTCCAGGGAAACGTTTTGACAGATACCATGAACTGGGTCAGTNTGCCTTTGGTGAGAAGCTGGGTCTTTATATTGTGGTGCCTCAGCAACTCATTGTTGAAATTGGGGTGAACATTGTATACATGGTCACNGGAGGGAAATCATTGCAGAAGTTTCATGATACTGTGTGTGACGACTGCAAAAAGATCAAATTGACCTATTTCATTATGATTTTTGCCTCTGTTCACTTTGTATTGTCTCACCTCCCCAACTTCAACTCCATTTCTGGTGTCTCTTTGGCAGCAGCAGTCATGTCCTTAAGTTACTCTACAATTGCATGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAAAATGCAGAGTATGGTTACAAAGCTAAGTCTACGGCAGGAACAATCTTTGGCTTCTTTAATGCCCTTGGTGATGTGGCTTTTGCCTATGCTGGACACAATGTGGTGCTTGAAATCCAAGCCACAATTCCCTCTACCCCAGAGAAGCCATCAAAGGGTCCTATGTGGAGAGGAGTTGTTGTTGCCTACATAGTTGTGGCTTTGTGCTACTTCCCAGTTGCTCTCATTGGTTACTGGATGTTTGGCAATACTGTTGATGACAACATCCTCATCACTCTACAGAAACCAAAATGGCTCATTGCAATGGCTAACTTGTTTGTTGTTGTCCATGTTATTGGAAGTTATCAGATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAATTTCAAACCTAGCAGGACTCTTCGTTTTATCGTACGCAATGTGTATGTGGCATTCACAATGTTCGTTGGTATTACCTTCCCATTTTTCGGTGGTCTCCTAGGATTTTTTGGAGGGTTTGCTTTTGCTCCAACAACATACTTTCTACCCTGCATCATGTGGCTTGCAATCTACAAACCAAGGAGATTCGGCTTGTCTTGGTGGTCTAACTATGTCTGCATTGTGCTTGGCCTATTATTGATGATTTTATCACCTATTGGAGGCTTGAGGGCAATCATACTCAATGCTAAGGACTACAAGTTCTATTCTTAGACTCATTCCCACACTGAAACAATGATGGAAAGGTGAGGAGCATGCAAATACGGATGAAGGAATGAAAGAACAACAAAGTCAAACTGTGTGAAAGAATTTGGTTTATCTTAGGTCAACTAGTGATATTTACTTCTGGAATAGATTGGTTGAGATGCATCCACACCCCTGCCTATTAGCGGAAAAGATAATTATGGTTAATTGGTTAGGGCCACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01701	30406	37040	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001701s00038223.1	PF01490.13	Aa_trans	30	420	2.70E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.098
SRR1783600	control	2.159
SRR1783602	moderate drought stress	0.769
SRR1811619	moderate drought stress	0.719

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.127
DRR006520	Root Summer glycyrrhizin high producing strain	0.129
DRR006521	Root Winter glycyrrhizin high producing strain	0.134
DRR006522	Root Winter glycyrrhizin high producing strain	0.261
DRR006523	Root Summer glycyrrhizin low producing strain	0.580
DRR006524	Root Summer glycyrrhizin low producing strain	0.527
DRR006525	Leaf Summer glycyrrhizin high producing strain	98.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	98.217

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.317
SRR2868004	Drought Stress (root)	71.850
SRR2967015	Control (root)	97.089

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.651
SRR9715740	Leaf	68.048
SRR9715741	Leaf	108.557
SRR9715739	Root	1.222
SRR9715742	Root	2.689
SRR9715743	Root	2.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.557
SRR8749028	MeJA induced 9h	42.383
SRR8749029	MeJA induced 9h	29.176
SRR8749030	Uninduced	20.903
SRR8749031	Uninduced	11.643
SRR8749032	Uninduced	14.502

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.375
SRR8400027	Control - Root	22.131