Gene detail information of Glyur001700s00031786 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13510.1 | 4.00E-73 | Ribosomal protein L10 family protein |
| NR | XP_004507713.1 | 3.34E-147 | PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cicer arietinum] |
| COG | YP_005066740.1 | 2.00E-23 | 50S ribosomal protein L10 [Arthrospira platensis NIES-39] |
| Swissprot | tr|O80362|RK10_TOBAC | 2.00E-105 | 50S ribosomal protein L10, chloroplastic (Precursor) |
| trEMBL | tr|B7FHY0|B7FHY0_MEDTR | 6.00E-143 | Uncharacterized protein {ECO:0000313|EMBL:AFK49103.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01700 | 36349 | 37074 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001700s00031786.1 | PF00466.15 | Ribosomal_L10 | 62 | 158 | 1.70E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.469 |
| SRR1783600 | control | 46.704 |
| SRR1783602 | moderate drought stress | 43.499 |
| SRR1811619 | moderate drought stress | 43.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.960 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.641 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.690 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.858 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 215.794 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 215.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.516 |
| SRR2868004 | Drought Stress (root) | 22.439 |
| SRR2967015 | Control (root) | 19.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 160.085 |
| SRR9715740 | Leaf | 153.889 |
| SRR9715741 | Leaf | 110.983 |
| SRR9715739 | Root | 38.505 |
| SRR9715742 | Root | 34.929 |
| SRR9715743 | Root | 38.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.838 |
| SRR8749028 | MeJA induced 9h | 5.985 |
| SRR8749029 | MeJA induced 9h | 6.550 |
| SRR8749030 | Uninduced | 2.551 |
| SRR8749031 | Uninduced | 1.636 |
| SRR8749032 | Uninduced | 3.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.689 |
| SRR8400027 | Control - Root | 38.691 |