Gene detail

Gene detail information of Glyur001697s00030394

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16150.3	0	plastidic GLC translocator
NR	KEH25361.1	0	sugar porter (SP) family MFS transporter [Medicago truncatula]
COG	YP_745085.1	3.00E-85	sugar-proton symporter [Granulibacter bethesdensis CGDNIH1]
Swissprot	tr\|Q56ZZ7\|PLST4_ARATH	0	Plastidic glucose transporter 4
trEMBL	tr\|A0A072U7Q1\|A0A072U7Q1_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:KEH25361.1}

Sequence

Transcript Sequence

>Glyur001697s00030394.1
ATGCAGGCATCAACTTTTGCAATTAAAGGTGCCATTTTTGGGGCCCAAAATCAAAAGGGGTTGGTGGGTTTTGGAGAGTTCAGAAATGGGAGTGTTCTGAGACCCAGAAGAGTCTGCATGACCAAAATTTCCAATTCATGTGGCATAAGGCTTGGTTCTGCCACTATGGAAACTGAGCTAACTAGTGGAAGAGTTGGTTTTAGTGGCATTTTGGGGTCCTCTGCTAAGCCCAGATCAATCAGGGTTCAGGCTTCTGGTTTGCATGCTGTTGCTTATGGCTTTTTACTTCTATCTGTTTCATGTATTAATGCGCTCTTAAAACAAATCATGCAAGTAAAATTTTGGGTTGCAGATGGAGATATTGAGAATGTTGTCCCCGCTGTTCCTCAAGGAAAATCTTCTGGATCTGTTCTACCCTATGTTGGTGTTGCTTGCCTTGGAGCCATTTTATTTGGATACCATCTTGGGGTGGTAAATGGTGCTCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTCTACAAGGTTGGATTGTCAGTACGCTACTTGCTGGTGCCACTGTTGGTTCATTTACTGGTGGAACATTGGCTGACAAATTCGGTAGAACTAGGACTTTTCAGTTGGATGCAATCCCTCTAGCAATTGGAGCATTTCTTTGTGCTACAGCCCAGAATGTTCCGACAATGATCATTGGTCGCTTGCTTGCTGGAATAGGAATTGGTGTTACGTCTGCTATAGTACCACTATACATATCTGAGATTTCACCAACTGAAATTCGTGGTGCACTCGGATCTGTCAATCAACTTTTTATATGTGTTGGGATTCTTGTAGCACTGGTGGCTGGACTGCCTCTGTCAGGAAACCCTATATGGTGGCGGACAATGTTTGGCATTTCAGTAGTTCCATCTGTTCTGTTAGCTCTAGGAATGGCAATTTCTCCGGAAAGTCCNCGTTGGCTTTTCCAGCAAGGAAAAATACCTGAAGCTGAAAAGGCTATTAAAACACTATATGGGAAAGAAAGAGTTGCTGCAGTTATGCATGACTTAAGAACAGCAAGTCAAGGTTCTTCTGAACCTGAAGCAGGGTGGTTTGATCTGTTTAGTAGCCGATATTGGAAAGTTGTCAGTGTTGGGGCAGCACTTTTCCTGTTCCAGCAGTTTGCCGGAATAAATGCTGTGGTGTATTATTCAACTGCTGTGTTCCGCAGTGCTGGAATTGCTTCTGATGTTGCGGCAAGTGCCTTGGTTGGTGCATCAAATGTTTTTGGAACTGCGCTTGCTTCCTCATTGATGGACAAACAAGGAAGGAAAAGTCTCCTTATCACAAGCTTTAGTGGGATGGCTGCTTCTATGTTGCTTCTTTCTCTGTCTTTCACTTGGAAGGTCCTTGCACCATACTCCGGCACCCTCGCTGTCCTTGGGACTGTTCTCTATGTCCTATCCTTCTCTCTTGGTGCTGGTCCTGTGCCTGCCCTTCTTCTACCAGAGATATTTGCTTCTAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGGATCTCCAACTTCGTCATCGGCCTCTATTTCCTGAGTGTTGTAAACAAGTTCGGTATCAGCTCCGTATACTTGGGGTTCTCAGCTGTATGTGTTCTTGCTGTTTTATACATAGCCGGTAATGTCGTGGAAACAAAGGGTCGGTCGTTGGAGGAAATAGAACGCGCTCTTAGTAGTCCTTCAACTTGAAGAAACTTCCCAGAAGTGCATGCGGTCATAATGCTTCTCTTTGAACTGTTTTTTAGCTTTGTACTCTTGCTACTTGTGTACTCTACAGGGTTACCATTTCTCTTGGCAAGAGTTTGCAGCCTGGCTAACATGTTTATTGTAACCAAATTTTGCTGGTTTGGCAAATGTGGGAACAATATTGTGTGAGCTTTGGTTAAGCATTCAGTACCATCTTTTTCCACAGCTTTTGTCACAATGTATGTTTTGTAGTGCTAGATATCAGCAAGGACTTTCTCACTTCAATTGAGAGAATTTTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01697	27902	34453	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001697s00030394.1	PF00083.19	Sugar_tr	143	573	3.50E-101
Glyur001697s00030394.2	PF00083.19	Sugar_tr	120	550	3.10E-101

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.597
SRR1783600	control	36.826
SRR1783602	moderate drought stress	33.445
SRR1811619	moderate drought stress	33.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.546
DRR006520	Root Summer glycyrrhizin high producing strain	46.019
DRR006521	Root Winter glycyrrhizin high producing strain	33.065
DRR006522	Root Winter glycyrrhizin high producing strain	31.588
DRR006523	Root Summer glycyrrhizin low producing strain	30.222
DRR006524	Root Summer glycyrrhizin low producing strain	30.270
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.963
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.293
SRR2868004	Drought Stress (root)	23.969
SRR2967015	Control (root)	27.382

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.466
SRR9715740	Leaf	22.356
SRR9715741	Leaf	20.759
SRR9715739	Root	30.288
SRR9715742	Root	48.755
SRR9715743	Root	47.046

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.958
SRR8749028	MeJA induced 9h	14.369
SRR8749029	MeJA induced 9h	6.548
SRR8749030	Uninduced	4.803
SRR8749031	Uninduced	1.123
SRR8749032	Uninduced	3.900

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.641
SRR8400027	Control - Root	50.730