Gene detail

Gene detail information of Glyur001696s00038371

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20480.1	2.00E-120	EF-TU receptor
NR	XP_004486275.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Cicer arietinum]
COG	YP_004775215.1	8.00E-46	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	5.00E-161	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|A0A072V4N4\|A0A072V4N4_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH36626.1}

Sequence

Transcript Sequence

>Glyur001696s00038371.1
TTGTTTATTTCTTATTCCTCCATGGTGTGCACAATTCTAGGTTCAATACCCGAGGAGATTAGCTATCTTGATCAACTTGAATATCTAGGATTGACAAAAAACAGAATGAATGGACCTATTCCTGCAAAAATCCTGAACATTTCAACATTGACATACTTGGATCTTGGACAAAATTCTCTCTCGGGCATTCTTCCACCAGAAATGGGATATGGCCTTCCAAACCTGGAAGAACTGCTCTTGTATGAAAACAAACTTGTTGGAAANATTCCAAATAGTATATCCAATGCTTCTAAGCTCGCTATAATTGACTTGAGTGATAATGAATTCAGTGGAATAATACCCAATGCTTTTGGAGGTTTAAGATTCCTCGAAAGACTTCGAATAAGTGGCAATAATTTGACAACAAATGATTCTCTTNATTCCAACTTCTTTACTTCACTGACAAGTTGTAGATATTTGACAATTCTGGAAGTATCAGGAAATAGTTTAGCGTCCAAATTACCCAAGTCAATTGGAAACTTATCATTAAAAGAATTGTATGTAGATGCTTCTGGAATTTATGGCAATATTCCATTGGAAATCGGAAACATGAGCAACTTGATGATTTTATCTTTGAGTGGGAATTATCTAAATGGACCAATACCNAATACAATCAAAGGGCTNCAAAAACTTCAATATTTGNGTCTTGACAATAATGGACTGCAGGNAGCCATCATTGANNAGCTTTGTGAAATNAGGAGTTTGAGTGAGTTGNATCTAACAAACAATAAGCTTTCTGGAGTGTTACCAACATGCTTGGGAAATATGNCNTCTCTTAGAAAGGTACACATAGGATCTAANAGATTGACCTCTGGGATACCTTCCTCTTTTTGGAGTCTCAAAGATATCTTAGAGGTAAACTTATCCTCCAATGCTTTAACAGGNGATCTTCCACCTGAGATTGGGAANTTGAGAGCTATTGTACTATTAGATTTGTCAGGAAATCAAATTTCAAGCAACATTCCTACAACAATCTATTTCTTGAACACTCTTCAGACTTTGTCCTTAGCGCATAACAAATTGCAAGGGTCAATTCCCACATTACTTGGCCAAATGGTAAGCTTGAGCTTCTTGGACTTGTCCCAAAATCTTCTTACTGGTGTGATTCCAAAATCCTTANAGTCACTTNTTTATCTCAAAAACATCAACTTTTCATACAACAAATTACAAGGAGAGATTCCTNATGGTGGACCTTTCAAAGATTTCACAGCTCAATCTTTTATGCATAATGAAGCACTTTGCGGTAATCCTCGCCTACAAGTGCCTCCATGTGATAAACAAGTTATGAGAAGGTCAATGGCAAAGATGTTATTAATCAAATGCATACTGCCCATAACTGTGTNAGCCATTTTGGTTGTTGCATGCATAATACTTCTACATCACAAAAGGAAAAAGGTTCCACATGCATGGGATTCACCATCTTTAGGAGTTNCAAGAAGGATTTCCTATTTTGAACTTGTACGAGCAACTAATGGATTTAGTGAGAGCCATTTACTTGGAAGGGGGAGCTTTGGCTCTGTGTATCAAGGGATGCTTTCTAGTGGGAAGATGGTTGCGATTAAAGTAATTGATTTGAACTTGGAAGAAACATCAAGGAGCTTTGATGCAGAATGCAATGCAATGCGCAATCTACGGCATCGAAATCTTGTTAAGATTATCAGTAGTTGTTCAAATGGTGATTTCAAATCTCTGGTGATGGAGTTCATGTCAAATGGAAGTCTTGACAAATGGTTGTACACAAATAACTATAACTATTGTTTGAATTTCTTACAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCAATAACAGTGGTTCATTGTGATCTCAAGCCAAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAACTCTTGGATGAAGGACAGTCTAAAACTCATACAGAGACTTTGGCNACTCTTGGCTACGTTGCACCAGAGTATGGAACTAAGGGAATTGCTTCGGTCAAAGGAGATGTGTACAGCTACGGAATTATGCTAATGGAAATCTTCACAGGAAAGAAGCCAACAGATGATATGTTTGCAGGAGAATTAAGTTTAAAAAGTTGGATCGACGAATCGATGCACAATTCAGTTATGAAAGTTGTGGATTCCAATTTAGTCCAACAACATGGGGAACAAATTGATGACTTATTGGCTCATATATCATCTATTTTGGGTTTAGCCTTGAGTTGTTGCACAGATTCACCTGGAGCACGAACTAATATGACAGATGTGACTGCATCATTAAGCAAAATCAAGGCCTTATTGATTCGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01696	33393	36086	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001696s00038371.1	PF13855.1	LRR_8	73	133	1.20E-07
Glyur001696s00038371.1	PF13855.1	LRR_8	247	306	4.30E-08
Glyur001696s00038371.1	PF00560.28	LRR_1	367	389	1.2
Glyur001696s00038371.1	PF00069.20	Pkinase	509	776	1.70E-45
Glyur001696s00038371.2	PF13855.1	LRR_8	66	126	1.20E-07
Glyur001696s00038371.2	PF13855.1	LRR_8	240	299	4.20E-08
Glyur001696s00038371.2	PF00560.28	LRR_1	360	382	1.2
Glyur001696s00038371.2	PF00069.20	Pkinase	502	769	1.70E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.724
SRR1783600	control	0.723
SRR1783602	moderate drought stress	0.064
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.976
DRR006524	Root Summer glycyrrhizin low producing strain	3.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.807
SRR2868004	Drought Stress (root)	1.241
SRR2967015	Control (root)	0.894

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.759
SRR9715740	Leaf	12.432
SRR9715741	Leaf	14.864
SRR9715739	Root	0.683
SRR9715742	Root	1.118
SRR9715743	Root	0.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.436
SRR8749028	MeJA induced 9h	0.366
SRR8749029	MeJA induced 9h	0.911
SRR8749030	Uninduced	0.119
SRR8749031	Uninduced	0.143
SRR8749032	Uninduced	0.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.832
SRR8400027	Control - Root	1.174